STOM report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	54 studies	49% ± 21%	Explore
fibroblast	39 studies	33% ± 15%	Explore
pericyte	39 studies	51% ± 23%	Explore
natural killer cell	33 studies	28% ± 7%	Explore
smooth muscle cell	27 studies	35% ± 15%	Explore
endothelial cell of lymphatic vessel	24 studies	47% ± 16%	Explore
macrophage	21 studies	27% ± 11%	Explore
CD8-positive, alpha-beta T cell	20 studies	22% ± 6%	Explore
capillary endothelial cell	18 studies	51% ± 17%	Explore
ciliated cell	17 studies	39% ± 17%	Explore
endothelial cell of artery	17 studies	66% ± 20%	Explore
mature NK T cell	17 studies	27% ± 6%	Explore
vein endothelial cell	15 studies	58% ± 18%	Explore
endothelial cell of vascular tree	15 studies	60% ± 18%	Explore
CD16-positive, CD56-dim natural killer cell, human	14 studies	32% ± 8%	Explore
basal cell	14 studies	30% ± 15%	Explore
gamma-delta T cell	13 studies	30% ± 8%	Explore
T cell	12 studies	23% ± 9%	Explore
connective tissue cell	12 studies	28% ± 11%	Explore
CD16-negative, CD56-bright natural killer cell, human	12 studies	26% ± 10%	Explore
myofibroblast cell	12 studies	27% ± 13%	Explore
mucosal invariant T cell	11 studies	26% ± 7%	Explore
type I pneumocyte	10 studies	41% ± 12%	Explore
astrocyte	10 studies	24% ± 11%	Explore
CD4-positive, alpha-beta T cell	10 studies	21% ± 4%	Explore
platelet	9 studies	45% ± 18%	Explore
CD8-positive, alpha-beta memory T cell	9 studies	27% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell	9 studies	23% ± 8%	Explore
alveolar macrophage	8 studies	29% ± 10%	Explore
type II pneumocyte	8 studies	27% ± 12%	Explore
erythrocyte	8 studies	40% ± 18%	Explore
adipocyte	8 studies	32% ± 12%	Explore
myeloid cell	7 studies	28% ± 9%	Explore
megakaryocyte	6 studies	63% ± 28%	Explore
epithelial cell	6 studies	28% ± 10%	Explore
microglial cell	6 studies	28% ± 8%	Explore
innate lymphoid cell	5 studies	21% ± 7%	Explore
hepatocyte	5 studies	53% ± 26%	Explore
secretory cell	5 studies	37% ± 15%	Explore
conventional dendritic cell	4 studies	21% ± 3%	Explore
glomerular endothelial cell	4 studies	56% ± 6%	Explore
epithelial cell of proximal tubule	4 studies	21% ± 5%	Explore
monocyte	4 studies	29% ± 8%	Explore
adventitial cell	4 studies	31% ± 14%	Explore
endothelial cell of sinusoid	4 studies	35% ± 15%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	23% ± 7%	Explore
CD4-positive, alpha-beta memory T cell	4 studies	19% ± 2%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	45% ± 5%	Explore
dendritic cell	4 studies	29% ± 10%	Explore
hematopoietic stem cell	4 studies	31% ± 21%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	29% ± 6%	Explore
club cell	3 studies	38% ± 7%	Explore
lymphocyte	3 studies	43% ± 16%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	20% ± 3%	Explore
muscle cell	3 studies	51% ± 7%	Explore
group 3 innate lymphoid cell	3 studies	18% ± 2%	Explore
melanocyte	3 studies	17% ± 1%	Explore
myoepithelial cell	3 studies	25% ± 3%	Explore
neuron	3 studies	22% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	16 studies	31% ± 9%	Explore
liver	7 studies	30% ± 17%	Explore
peripheral blood	6 studies	20% ± 6%	Explore
uterus	5 studies	26% ± 5%	Explore
kidney	4 studies	22% ± 6%	Explore
breast	4 studies	30% ± 5%	Explore
heart	3 studies	20% ± 4%	Explore
prostate	3 studies	25% ± 5%	Explore
brain	3 studies	26% ± 7%	Explore
placenta	3 studies	23% ± 4%	Explore
adipose	3 studies	33% ± 18%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	30339.69	459 / 459	99%	326.06	1109 / 1118
liver	100%	18172.53	225 / 226	99%	259.91	401 / 406
lung	100%	36290.19	578 / 578	97%	260.75	1125 / 1155
skin	100%	14497.80	1806 / 1809	97%	244.26	457 / 472
kidney	98%	10574.84	87 / 89	98%	381.21	887 / 901
uterus	100%	18630.64	170 / 170	96%	266.64	440 / 459
thymus	100%	15300.19	650 / 653	96%	182.95	578 / 605
esophagus	98%	21185.56	1417 / 1445	96%	213.96	176 / 183
adrenal gland	98%	13769.69	254 / 258	94%	169.13	217 / 230
prostate	99%	14339.47	242 / 245	84%	105.68	424 / 502
bladder	100%	23429.38	21 / 21	79%	134.67	399 / 504
brain	80%	8199.19	2123 / 2642	97%	188.55	681 / 705
intestine	98%	20757.70	951 / 966	72%	88.01	382 / 527
ovary	98%	9430.55	176 / 180	70%	59.19	299 / 430
stomach	84%	14162.59	302 / 359	79%	113.23	226 / 286
pancreas	16%	759.84	51 / 328	96%	170.53	170 / 178
adipose	100%	37706.13	1204 / 1204	0%	0	0 / 0
blood vessel	100%	21972.78	1335 / 1335	0%	0	0 / 0
spleen	100%	14245.05	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	270.20	45 / 45
heart	100%	13965.41	859 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	93%	153.00	27 / 29
muscle	88%	6816.14	703 / 803	0%	0	0 / 0
peripheral blood	86%	16211.90	801 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	80%	151.59	64 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1