Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 23 studies | 33% ± 11% | |
glutamatergic neuron | 12 studies | 59% ± 25% | |
oligodendrocyte precursor cell | 12 studies | 36% ± 17% | |
astrocyte | 12 studies | 39% ± 19% | |
GABAergic neuron | 11 studies | 52% ± 26% | |
microglial cell | 11 studies | 35% ± 13% | |
oligodendrocyte | 11 studies | 29% ± 14% | |
macrophage | 9 studies | 28% ± 8% | |
adipocyte | 8 studies | 29% ± 9% | |
neuron | 7 studies | 44% ± 16% | |
epithelial cell | 7 studies | 33% ± 12% | |
fibroblast | 7 studies | 22% ± 5% | |
interneuron | 6 studies | 60% ± 26% | |
retinal ganglion cell | 6 studies | 54% ± 8% | |
retinal cone cell | 6 studies | 38% ± 17% | |
endothelial cell of lymphatic vessel | 6 studies | 31% ± 10% | |
amacrine cell | 5 studies | 32% ± 7% | |
retina horizontal cell | 5 studies | 34% ± 10% | |
retinal rod cell | 5 studies | 30% ± 13% | |
cardiac muscle cell | 5 studies | 38% ± 17% | |
ciliated cell | 5 studies | 21% ± 4% | |
smooth muscle cell | 5 studies | 27% ± 8% | |
natural killer cell | 5 studies | 18% ± 3% | |
pericyte | 5 studies | 22% ± 5% | |
type I pneumocyte | 5 studies | 26% ± 6% | |
type II pneumocyte | 5 studies | 21% ± 4% | |
granule cell | 4 studies | 33% ± 4% | |
lymphocyte | 4 studies | 25% ± 6% | |
Mueller cell | 4 studies | 27% ± 7% | |
club cell | 4 studies | 27% ± 8% | |
basal cell | 4 studies | 29% ± 12% | |
GABAergic interneuron | 3 studies | 56% ± 8% | |
progenitor cell | 3 studies | 24% ± 3% | |
retinal bipolar neuron | 3 studies | 30% ± 6% | |
vein endothelial cell | 3 studies | 29% ± 9% | |
GABAergic amacrine cell | 3 studies | 39% ± 7% | |
OFF-bipolar cell | 3 studies | 34% ± 1% | |
ON-bipolar cell | 3 studies | 40% ± 2% | |
glycinergic amacrine cell | 3 studies | 34% ± 4% | |
endothelial cell of vascular tree | 3 studies | 26% ± 12% | |
hepatocyte | 3 studies | 30% ± 10% | |
retinal pigment epithelial cell | 3 studies | 32% ± 12% | |
ependymal cell | 3 studies | 32% ± 10% | |
T cell | 3 studies | 18% ± 1% | |
alveolar macrophage | 3 studies | 23% ± 6% | |
capillary endothelial cell | 3 studies | 20% ± 0% | |
respiratory goblet cell | 3 studies | 32% ± 10% | |
mast cell | 3 studies | 24% ± 8% | |
mucus secreting cell | 3 studies | 21% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2209.66 | 1445 / 1445 | 100% | 14.28 | 183 / 183 |
ovary | 100% | 1511.68 | 180 / 180 | 100% | 14.59 | 430 / 430 |
brain | 100% | 3509.00 | 2641 / 2642 | 100% | 17.24 | 705 / 705 |
breast | 100% | 1932.99 | 459 / 459 | 100% | 24.92 | 1116 / 1118 |
prostate | 100% | 1611.48 | 245 / 245 | 100% | 15.70 | 501 / 502 |
lung | 100% | 1757.05 | 576 / 578 | 100% | 17.91 | 1154 / 1155 |
uterus | 100% | 1566.85 | 170 / 170 | 99% | 14.32 | 456 / 459 |
kidney | 100% | 1782.60 | 89 / 89 | 99% | 14.38 | 895 / 901 |
thymus | 100% | 1799.85 | 653 / 653 | 99% | 12.37 | 599 / 605 |
bladder | 100% | 1660.33 | 21 / 21 | 98% | 12.93 | 495 / 504 |
stomach | 100% | 1338.48 | 359 / 359 | 98% | 13.15 | 279 / 286 |
intestine | 100% | 1710.75 | 966 / 966 | 97% | 11.77 | 512 / 527 |
liver | 100% | 1106.55 | 225 / 226 | 97% | 9.90 | 395 / 406 |
adrenal gland | 100% | 2137.66 | 258 / 258 | 97% | 11.25 | 222 / 230 |
skin | 100% | 1588.56 | 1805 / 1809 | 94% | 11.35 | 444 / 472 |
pancreas | 95% | 759.55 | 311 / 328 | 99% | 10.90 | 176 / 178 |
adipose | 100% | 1994.21 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 10.33 | 29 / 29 |
muscle | 100% | 4126.53 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1296.89 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.40 | 1 / 1 |
blood vessel | 100% | 1883.62 | 1334 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 13.21 | 44 / 45 |
heart | 98% | 2919.23 | 841 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 79% | 7.15 | 63 / 80 |
peripheral blood | 78% | 1075.04 | 725 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032956 | Biological process | regulation of actin cytoskeleton organization |
GO_0051489 | Biological process | regulation of filopodium assembly |
GO_0061003 | Biological process | positive regulation of dendritic spine morphogenesis |
GO_1900454 | Biological process | positive regulation of long-term synaptic depression |
GO_0098964 | Biological process | anterograde dendritic transport of messenger ribonucleoprotein complex |
GO_0034599 | Biological process | cellular response to oxidative stress |
GO_0007281 | Biological process | germ cell development |
GO_0008298 | Biological process | intracellular mRNA localization |
GO_0035418 | Biological process | protein localization to synapse |
GO_0051965 | Biological process | positive regulation of synapse assembly |
GO_0048592 | Biological process | eye morphogenesis |
GO_0005730 | Cellular component | nucleolus |
GO_0005886 | Cellular component | plasma membrane |
GO_0005874 | Cellular component | microtubule |
GO_0016020 | Cellular component | membrane |
GO_0043198 | Cellular component | dendritic shaft |
GO_0043025 | Cellular component | neuronal cell body |
GO_0043005 | Cellular component | neuron projection |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_1990124 | Cellular component | messenger ribonucleoprotein complex |
GO_0030424 | Cellular component | axon |
GO_0032839 | Cellular component | dendrite cytoplasm |
GO_0031965 | Cellular component | nuclear membrane |
GO_0010494 | Cellular component | cytoplasmic stress granule |
GO_0043022 | Molecular function | ribosome binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0051019 | Molecular function | mitogen-activated protein kinase binding |
GO_0030544 | Molecular function | Hsp70 protein binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0019894 | Molecular function | kinesin binding |
GO_0003725 | Molecular function | double-stranded RNA binding |
Gene name | STAU2 |
Protein name | Double-stranded RNA-binding protein Staufen homolog 2 Staufen double-stranded RNA binding protein 2 |
Synonyms | hCG_1810951 protein variant |
Description | FUNCTION: RNA-binding protein required for the microtubule-dependent transport of neuronal RNA from the cell body to the dendrite. As protein synthesis occurs within the dendrite, the localization of specific mRNAs to dendrites may be a prerequisite for neurite outgrowth and plasticity at sites distant from the cell body (By similarity). . |
Accessions | ENST00000355780.9 [Q9NUL3-3] ENST00000521210.5 [Q9NUL3-7] E5RJN7 ENST00000521736.5 Q4LE57 E5RGT3 ENST00000517542.5 [Q9NUL3-8] ENST00000523558.5 [Q9NUL3-6] ENST00000521451.5 [Q9NUL3-4] E5RGQ5 E7EPX0 ENST00000518767.5 ENST00000521727.5 H0YBY0 Q9NUL3 ENST00000518981.5 ENST00000523533.5 ENST00000518502.5 E5RFK1 Q2TBD5 ENST00000521419.5 E5RJ67 ENST00000521447.5 ENST00000519961.5 E7EVJ4 ENST00000522695.5 [Q9NUL3-2] ENST00000522509.5 [Q9NUL3-3] ENST00000524104.5 [Q9NUL3-5] ENST00000524300.6 [Q9NUL3-1] E7EVI1 |