SMIM19 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	17 studies	39% ± 15%	Explore
natural killer cell	10 studies	18% ± 4%	Explore
fibroblast	9 studies	23% ± 10%	Explore
epithelial cell	7 studies	44% ± 17%	Explore
endothelial cell	7 studies	26% ± 8%	Explore
plasmacytoid dendritic cell	7 studies	24% ± 7%	Explore
CD16-positive, CD56-dim natural killer cell, human	6 studies	17% ± 2%	Explore
basal cell	5 studies	35% ± 11%	Explore
club cell	5 studies	20% ± 8%	Explore
B cell	5 studies	21% ± 3%	Explore
epithelial cell of proximal tubule	5 studies	24% ± 6%	Explore
kidney loop of Henle epithelial cell	5 studies	21% ± 2%	Explore
smooth muscle cell	5 studies	17% ± 2%	Explore
endothelial cell of lymphatic vessel	5 studies	23% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	4 studies	20% ± 4%	Explore
abnormal cell	4 studies	23% ± 4%	Explore
regulatory T cell	4 studies	18% ± 1%	Explore
deuterosomal cell	3 studies	22% ± 5%	Explore
secretory cell	3 studies	28% ± 8%	Explore
CD4-positive, alpha-beta T cell	3 studies	18% ± 2%	Explore
conventional dendritic cell	3 studies	29% ± 9%	Explore
hematopoietic precursor cell	3 studies	28% ± 9%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	3 studies	19% ± 5%	Explore
enterocyte	3 studies	18% ± 1%	Explore
macrophage	3 studies	23% ± 2%	Explore
dendritic cell	3 studies	37% ± 8%	Explore
goblet cell	3 studies	23% ± 6%	Explore
intestinal crypt stem cell	3 studies	24% ± 3%	Explore
transit amplifying cell	3 studies	23% ± 8%	Explore
connective tissue cell	3 studies	22% ± 2%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	18% ± 1%	Explore
hepatocyte	3 studies	34% ± 23%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	7 studies	22% ± 8%	Explore
brain	4 studies	24% ± 9%	Explore
peripheral blood	3 studies	23% ± 1%	Explore
liver	3 studies	23% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	1475.49	180 / 180	100%	23.43	430 / 430
pancreas	100%	1288.50	328 / 328	100%	18.88	178 / 178
thymus	100%	2051.24	653 / 653	100%	32.33	605 / 605
brain	100%	1309.95	2638 / 2642	100%	22.41	705 / 705
prostate	100%	1168.48	245 / 245	100%	20.13	501 / 502
uterus	100%	1210.95	170 / 170	100%	20.94	458 / 459
liver	100%	1607.30	226 / 226	100%	20.98	405 / 406
breast	100%	1703.09	459 / 459	100%	32.47	1115 / 1118
bladder	100%	1238.48	21 / 21	100%	20.24	502 / 504
esophagus	100%	1167.67	1445 / 1445	99%	17.02	182 / 183
kidney	100%	1620.81	89 / 89	99%	18.37	896 / 901
skin	100%	1257.90	1809 / 1809	99%	19.14	469 / 472
stomach	100%	1187.98	359 / 359	99%	16.44	284 / 286
lung	99%	1067.18	575 / 578	100%	21.05	1152 / 1155
adrenal gland	100%	1881.52	258 / 258	99%	19.11	228 / 230
intestine	100%	1220.41	966 / 966	99%	18.53	521 / 527
adipose	100%	1625.52	1204 / 1204	0%	0	0 / 0
blood vessel	100%	1690.85	1335 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	100%	19.95	80 / 80
lymph node	0%	0	0 / 0	100%	21.93	29 / 29
spleen	100%	1149.61	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	19.28	45 / 45
ureter	0%	0	0 / 0	100%	17.74	1 / 1
muscle	100%	1731.64	802 / 803	0%	0	0 / 0
heart	99%	1284.83	854 / 861	0%	0	0 / 0
peripheral blood	62%	539.17	577 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0