Name | Number of supported studies | Average coverage | |
---|---|---|---|
B cell | 41 studies | 39% ± 14% | |
fibroblast | 34 studies | 24% ± 9% | |
naive B cell | 20 studies | 36% ± 15% | |
memory B cell | 19 studies | 40% ± 17% | |
ciliated cell | 19 studies | 46% ± 14% | |
plasmacytoid dendritic cell | 17 studies | 37% ± 13% | |
endothelial cell | 17 studies | 26% ± 9% | |
epithelial cell | 13 studies | 34% ± 17% | |
goblet cell | 11 studies | 48% ± 17% | |
type II pneumocyte | 10 studies | 24% ± 11% | |
club cell | 10 studies | 31% ± 13% | |
conventional dendritic cell | 9 studies | 27% ± 12% | |
macrophage | 9 studies | 21% ± 4% | |
oligodendrocyte | 9 studies | 29% ± 9% | |
respiratory goblet cell | 8 studies | 39% ± 12% | |
secretory cell | 8 studies | 28% ± 11% | |
astrocyte | 8 studies | 28% ± 10% | |
adipocyte | 8 studies | 22% ± 6% | |
type I pneumocyte | 7 studies | 24% ± 7% | |
GABAergic neuron | 7 studies | 36% ± 20% | |
connective tissue cell | 7 studies | 21% ± 4% | |
precursor B cell | 6 studies | 37% ± 11% | |
basal cell | 6 studies | 38% ± 14% | |
myofibroblast cell | 6 studies | 18% ± 1% | |
non-classical monocyte | 5 studies | 25% ± 7% | |
neuron | 5 studies | 33% ± 14% | |
glutamatergic neuron | 5 studies | 47% ± 21% | |
adventitial cell | 5 studies | 30% ± 4% | |
hepatocyte | 5 studies | 64% ± 11% | |
oligodendrocyte precursor cell | 5 studies | 28% ± 10% | |
abnormal cell | 5 studies | 35% ± 14% | |
monocyte | 5 studies | 20% ± 4% | |
deuterosomal cell | 4 studies | 37% ± 8% | |
duct epithelial cell | 4 studies | 28% ± 10% | |
classical monocyte | 4 studies | 25% ± 7% | |
kidney loop of Henle epithelial cell | 4 studies | 19% ± 4% | |
retinal bipolar neuron | 4 studies | 30% ± 13% | |
pericyte | 4 studies | 22% ± 2% | |
smooth muscle cell | 4 studies | 19% ± 1% | |
myeloid cell | 4 studies | 26% ± 6% | |
brush cell | 4 studies | 30% ± 13% | |
immature B cell | 4 studies | 58% ± 15% | |
retinal rod cell | 4 studies | 19% ± 2% | |
mucus secreting cell | 4 studies | 44% ± 16% | |
germinal center B cell | 4 studies | 56% ± 10% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 53% ± 4% | |
luminal cell of prostate epithelium | 4 studies | 51% ± 10% | |
microglial cell | 4 studies | 22% ± 5% | |
alveolar macrophage | 4 studies | 21% ± 5% | |
interneuron | 4 studies | 41% ± 20% | |
ionocyte | 3 studies | 27% ± 10% | |
squamous epithelial cell | 3 studies | 40% ± 25% | |
capillary endothelial cell | 3 studies | 16% ± 1% | |
glomerular endothelial cell | 3 studies | 22% ± 1% | |
amacrine cell | 3 studies | 32% ± 11% | |
retina horizontal cell | 3 studies | 28% ± 5% | |
retinal cone cell | 3 studies | 32% ± 10% | |
lymphocyte | 3 studies | 17% ± 2% | |
Mueller cell | 3 studies | 28% ± 7% | |
rod bipolar cell | 3 studies | 28% ± 7% | |
endothelial cell of vascular tree | 3 studies | 19% ± 3% | |
endothelial cell of lymphatic vessel | 3 studies | 19% ± 4% | |
dendritic cell | 3 studies | 38% ± 13% | |
enteroendocrine cell | 3 studies | 30% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 12 studies | 28% ± 14% | |
brain | 9 studies | 33% ± 17% | |
eye | 6 studies | 25% ± 7% | |
intestine | 5 studies | 21% ± 5% | |
breast | 4 studies | 17% ± 1% | |
liver | 4 studies | 29% ± 8% | |
adipose | 4 studies | 27% ± 6% | |
peripheral blood | 3 studies | 26% ± 7% | |
prostate | 3 studies | 19% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 5243.48 | 245 / 245 | 100% | 132.74 | 502 / 502 |
brain | 100% | 3460.19 | 2637 / 2642 | 99% | 40.49 | 699 / 705 |
pancreas | 100% | 4063.93 | 328 / 328 | 99% | 54.28 | 176 / 178 |
liver | 100% | 9698.24 | 226 / 226 | 98% | 73.00 | 399 / 406 |
thymus | 100% | 3905.89 | 653 / 653 | 98% | 90.77 | 592 / 605 |
breast | 100% | 4221.83 | 459 / 459 | 98% | 142.22 | 1093 / 1118 |
lung | 100% | 3652.42 | 577 / 578 | 96% | 55.94 | 1105 / 1155 |
adrenal gland | 100% | 11121.72 | 258 / 258 | 95% | 46.41 | 218 / 230 |
kidney | 100% | 3078.19 | 89 / 89 | 94% | 39.06 | 850 / 901 |
intestine | 100% | 4239.48 | 966 / 966 | 88% | 33.69 | 463 / 527 |
bladder | 100% | 3925.52 | 21 / 21 | 88% | 33.71 | 441 / 504 |
esophagus | 100% | 3447.13 | 1445 / 1445 | 85% | 24.59 | 155 / 183 |
uterus | 100% | 3406.79 | 170 / 170 | 84% | 32.25 | 387 / 459 |
stomach | 100% | 3597.85 | 359 / 359 | 84% | 24.96 | 239 / 286 |
ovary | 100% | 3774.43 | 180 / 180 | 75% | 20.99 | 321 / 430 |
skin | 99% | 3199.56 | 1797 / 1809 | 70% | 18.40 | 329 / 472 |
adipose | 100% | 4026.66 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5171.02 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3260.70 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 31.53 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 91% | 34.48 | 41 / 45 |
heart | 86% | 1350.79 | 739 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 71% | 1901.89 | 660 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 59% | 35.41 | 17 / 29 |
muscle | 52% | 484.78 | 415 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 48% | 11.67 | 38 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001835 | Biological process | blastocyst hatching |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | SMIM14 |
Protein name | Small integral membrane protein 14 |
Synonyms | C4orf34 |
Description | |
Accessions | ENST00000511809.5 ENST00000505729.1 Q96QK8 D6RDB1 ENST00000295958.10 ENST00000507613.5 D6RGZ0 D6R9U3 |