Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 21 studies | 40% ± 22% | |
astrocyte | 19 studies | 48% ± 20% | |
endothelial cell | 18 studies | 34% ± 17% | |
microglial cell | 16 studies | 76% ± 20% | |
oligodendrocyte | 13 studies | 29% ± 13% | |
myeloid cell | 9 studies | 38% ± 17% | |
glutamatergic neuron | 8 studies | 34% ± 19% | |
dendritic cell | 8 studies | 29% ± 14% | |
GABAergic neuron | 7 studies | 43% ± 16% | |
T cell | 7 studies | 30% ± 9% | |
fibroblast | 6 studies | 27% ± 8% | |
non-classical monocyte | 5 studies | 22% ± 10% | |
interneuron | 5 studies | 40% ± 10% | |
CD16-negative, CD56-bright natural killer cell, human | 5 studies | 33% ± 19% | |
cardiac muscle cell | 5 studies | 31% ± 9% | |
endothelial cell of lymphatic vessel | 5 studies | 25% ± 6% | |
natural killer cell | 5 studies | 38% ± 14% | |
epithelial cell | 4 studies | 24% ± 7% | |
granule cell | 4 studies | 28% ± 6% | |
oligodendrocyte precursor cell | 4 studies | 24% ± 8% | |
plasma cell | 4 studies | 44% ± 14% | |
CD4-positive, alpha-beta T cell | 4 studies | 35% ± 11% | |
CD8-positive, alpha-beta T cell | 4 studies | 36% ± 15% | |
lymphocyte | 4 studies | 47% ± 19% | |
Mueller cell | 4 studies | 55% ± 17% | |
amacrine cell | 4 studies | 55% ± 14% | |
retinal cone cell | 4 studies | 73% ± 21% | |
monocyte | 4 studies | 33% ± 8% | |
smooth muscle cell | 4 studies | 20% ± 3% | |
GABAergic interneuron | 3 studies | 33% ± 12% | |
neuron | 3 studies | 37% ± 8% | |
mononuclear phagocyte | 3 studies | 24% ± 5% | |
GABAergic amacrine cell | 3 studies | 37% ± 10% | |
glycinergic amacrine cell | 3 studies | 34% ± 3% | |
retinal rod cell | 3 studies | 72% ± 6% | |
endothelial cell of vascular tree | 3 studies | 30% ± 17% | |
ependymal cell | 3 studies | 58% ± 15% | |
alveolar macrophage | 3 studies | 46% ± 8% | |
leukocyte | 3 studies | 79% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1477.58 | 2631 / 2642 | 99% | 12.05 | 697 / 705 |
breast | 100% | 1973.66 | 459 / 459 | 92% | 8.29 | 1031 / 1118 |
prostate | 100% | 2601.18 | 244 / 245 | 92% | 6.15 | 464 / 502 |
thymus | 100% | 1427.51 | 651 / 653 | 86% | 4.69 | 519 / 605 |
adrenal gland | 100% | 1318.59 | 258 / 258 | 82% | 5.53 | 189 / 230 |
kidney | 100% | 1010.43 | 89 / 89 | 81% | 5.86 | 730 / 901 |
lung | 100% | 1727.05 | 577 / 578 | 73% | 4.04 | 839 / 1155 |
esophagus | 86% | 1301.55 | 1248 / 1445 | 60% | 2.75 | 110 / 183 |
stomach | 95% | 804.66 | 340 / 359 | 50% | 2.36 | 142 / 286 |
skin | 66% | 426.43 | 1195 / 1809 | 77% | 5.18 | 365 / 472 |
uterus | 100% | 1622.56 | 170 / 170 | 43% | 1.84 | 196 / 459 |
bladder | 100% | 1562.10 | 21 / 21 | 36% | 1.66 | 181 / 504 |
ovary | 100% | 2609.08 | 180 / 180 | 36% | 1.48 | 154 / 430 |
intestine | 100% | 1017.85 | 963 / 966 | 31% | 1.28 | 163 / 527 |
pancreas | 49% | 209.83 | 162 / 328 | 75% | 3.72 | 134 / 178 |
spleen | 100% | 3410.13 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 1253.65 | 1202 / 1204 | 0% | 0 | 0 / 0 |
heart | 97% | 952.11 | 831 / 861 | 0% | 0 | 0 / 0 |
muscle | 93% | 927.01 | 748 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 10.15 | 27 / 29 |
blood vessel | 77% | 477.56 | 1028 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 69% | 3.10 | 31 / 45 |
peripheral blood | 64% | 1718.88 | 591 / 929 | 0% | 0 | 0 / 0 |
liver | 38% | 170.20 | 85 / 226 | 16% | 0.66 | 63 / 406 |
eye | 0% | 0 | 0 / 0 | 35% | 1.24 | 28 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0016607 | Cellular component | nuclear speck |
GO_0016235 | Cellular component | aggresome |
GO_0016604 | Cellular component | nuclear body |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005634 | Cellular component | nucleus |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0005515 | Molecular function | protein binding |
GO_0042393 | Molecular function | histone binding |
GO_0003682 | Molecular function | chromatin binding |
Gene name | SFMBT2 |
Protein name | Scm like with four mbt domains 2 Scm-like with four MBT domains protein 2 (Scm-like with 4 MBT domains protein 2) |
Synonyms | KIAA1617 |
Description | FUNCTION: Transcriptional repressor of HOXB13 gene. . |
Accessions | ENST00000361972.8 ENST00000682101.1 A0A804HLD5 ENST00000683762.1 ENST00000684547.1 A0A669KBL2 Q5T981 Q5VUG0 A0A804HK46 ENST00000682896.1 ENST00000682180.1 A0A804HKS4 ENST00000673876.1 Q5T980 ENST00000379713.8 ENST00000397167.6 ENST00000379711.2 A0A804HJD5 A0A804HJE9 |