Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 26 studies | 34% ± 19% | |
endothelial cell | 25 studies | 34% ± 14% | |
astrocyte | 17 studies | 40% ± 20% | |
fibroblast | 15 studies | 36% ± 11% | |
ciliated cell | 14 studies | 32% ± 11% | |
B cell | 13 studies | 19% ± 6% | |
microglial cell | 13 studies | 53% ± 20% | |
oligodendrocyte | 12 studies | 49% ± 18% | |
oligodendrocyte precursor cell | 11 studies | 40% ± 20% | |
pericyte | 10 studies | 26% ± 9% | |
myeloid cell | 10 studies | 35% ± 12% | |
mast cell | 10 studies | 26% ± 9% | |
basal cell | 9 studies | 35% ± 17% | |
glutamatergic neuron | 9 studies | 46% ± 22% | |
adipocyte | 9 studies | 42% ± 12% | |
GABAergic neuron | 8 studies | 43% ± 20% | |
type II pneumocyte | 8 studies | 47% ± 18% | |
endothelial cell of lymphatic vessel | 8 studies | 40% ± 13% | |
epithelial cell | 7 studies | 39% ± 13% | |
monocyte | 7 studies | 37% ± 16% | |
dendritic cell | 7 studies | 35% ± 7% | |
type I pneumocyte | 7 studies | 33% ± 10% | |
classical monocyte | 6 studies | 20% ± 6% | |
neuron | 6 studies | 47% ± 22% | |
retinal ganglion cell | 6 studies | 40% ± 18% | |
club cell | 6 studies | 26% ± 9% | |
retinal cone cell | 6 studies | 32% ± 8% | |
retinal rod cell | 6 studies | 25% ± 5% | |
alveolar macrophage | 6 studies | 43% ± 24% | |
smooth muscle cell | 6 studies | 25% ± 7% | |
retinal bipolar neuron | 5 studies | 25% ± 5% | |
interneuron | 5 studies | 54% ± 27% | |
amacrine cell | 5 studies | 33% ± 7% | |
retina horizontal cell | 5 studies | 39% ± 9% | |
cardiac muscle cell | 5 studies | 34% ± 6% | |
Mueller cell | 5 studies | 26% ± 6% | |
abnormal cell | 5 studies | 28% ± 14% | |
conventional dendritic cell | 4 studies | 30% ± 9% | |
non-classical monocyte | 4 studies | 20% ± 2% | |
mesothelial cell | 4 studies | 31% ± 13% | |
vein endothelial cell | 4 studies | 31% ± 17% | |
connective tissue cell | 4 studies | 22% ± 2% | |
hematopoietic stem cell | 4 studies | 20% ± 3% | |
T cell | 4 studies | 28% ± 9% | |
goblet cell | 4 studies | 28% ± 13% | |
secretory cell | 3 studies | 23% ± 11% | |
hematopoietic precursor cell | 3 studies | 28% ± 9% | |
glial cell | 3 studies | 28% ± 7% | |
progenitor cell | 3 studies | 26% ± 7% | |
plasma cell | 3 studies | 27% ± 8% | |
retinal pigment epithelial cell | 3 studies | 36% ± 19% | |
mononuclear phagocyte | 3 studies | 35% ± 2% | |
lymphocyte | 3 studies | 23% ± 5% | |
GABAergic amacrine cell | 3 studies | 34% ± 7% | |
OFF-bipolar cell | 3 studies | 28% ± 2% | |
ON-bipolar cell | 3 studies | 29% ± 4% | |
glycinergic amacrine cell | 3 studies | 28% ± 1% | |
rod bipolar cell | 3 studies | 30% ± 9% | |
naive B cell | 3 studies | 18% ± 2% | |
endothelial cell of vascular tree | 3 studies | 34% ± 12% | |
hepatocyte | 3 studies | 50% ± 17% | |
enteroendocrine cell | 3 studies | 32% ± 12% | |
capillary endothelial cell | 3 studies | 22% ± 5% | |
chondrocyte | 3 studies | 28% ± 7% | |
respiratory goblet cell | 3 studies | 36% ± 15% | |
transit amplifying cell | 3 studies | 40% ± 31% | |
granule cell | 3 studies | 34% ± 9% | |
plasmacytoid dendritic cell | 3 studies | 21% ± 3% | |
kidney loop of Henle epithelial cell | 3 studies | 20% ± 6% | |
mucus secreting cell | 3 studies | 28% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 954.98 | 1445 / 1445 | 100% | 12.48 | 183 / 183 |
lung | 100% | 1601.83 | 578 / 578 | 100% | 15.08 | 1154 / 1155 |
breast | 100% | 1493.97 | 459 / 459 | 100% | 20.36 | 1117 / 1118 |
brain | 100% | 1046.56 | 2641 / 2642 | 100% | 22.15 | 704 / 705 |
prostate | 100% | 1160.07 | 245 / 245 | 100% | 13.59 | 501 / 502 |
ovary | 100% | 1327.20 | 180 / 180 | 100% | 10.46 | 429 / 430 |
thymus | 100% | 2308.62 | 653 / 653 | 100% | 27.13 | 603 / 605 |
pancreas | 100% | 1008.01 | 328 / 328 | 99% | 14.95 | 177 / 178 |
uterus | 100% | 1135.48 | 170 / 170 | 99% | 12.02 | 455 / 459 |
intestine | 100% | 964.83 | 966 / 966 | 98% | 10.13 | 519 / 527 |
bladder | 100% | 1087.48 | 21 / 21 | 98% | 10.59 | 496 / 504 |
stomach | 100% | 851.28 | 359 / 359 | 98% | 10.48 | 281 / 286 |
kidney | 100% | 1037.98 | 89 / 89 | 97% | 11.62 | 878 / 901 |
adrenal gland | 100% | 1177.81 | 258 / 258 | 97% | 10.42 | 222 / 230 |
skin | 100% | 1168.54 | 1808 / 1809 | 95% | 13.24 | 449 / 472 |
liver | 100% | 499.73 | 225 / 226 | 90% | 8.02 | 367 / 406 |
adipose | 100% | 1430.46 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1309.11 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 8.45 | 29 / 29 |
muscle | 100% | 856.03 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1039.10 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.78 | 1 / 1 |
tonsil | 0% | 0 | 0 / 0 | 98% | 9.69 | 44 / 45 |
heart | 97% | 652.89 | 838 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 591.80 | 819 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 83% | 7.06 | 66 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030010 | Biological process | establishment of cell polarity |
GO_0001764 | Biological process | neuron migration |
GO_0031023 | Biological process | microtubule organizing center organization |
GO_0030030 | Biological process | cell projection organization |
GO_0035148 | Biological process | tube formation |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0007098 | Biological process | centrosome cycle |
GO_0005814 | Cellular component | centriole |
GO_0005911 | Cellular component | cell-cell junction |
GO_0005813 | Cellular component | centrosome |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005829 | Cellular component | cytosol |
GO_0097733 | Cellular component | photoreceptor cell cilium |
GO_0034451 | Cellular component | centriolar satellite |
GO_0005515 | Molecular function | protein binding |
Gene name | SDCCAG8 |
Protein name | SHH signaling and ciliogenesis regulator SDCCAG8 Serologically defined colon cancer antigen 8 Serologically defined colon cancer antigen 8 (Antigen NY-CO-8) (Centrosomal colon cancer autoantigen protein) (hCCCAP) |
Synonyms | CCCAP NPHP10 HSPC085 |
Description | FUNCTION: Plays a role in the establishment of cell polarity and epithelial lumen formation (By similarity). Also plays an essential role in ciliogenesis and subsequent Hedgehog signaling pathway that requires the presence of intact primary cilia for pathway activation. Mechanistically, interacts with and mediates RABEP2 centrosomal localization which is critical for ciliogenesis . . |
Accessions | ENST00000627744.2 ENST00000366541.8 [Q86SQ7-1] ENST00000435549.1 S4R323 ENST00000476722.6 ENST00000630755.1 A0A0C4DG71 A0A0G2JQM2 ENST00000622598.3 [Q86SQ7-1] ENST00000630785.2 A0A0G2JR50 A0A0G2JR20 Q86SQ7 |