Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 39 studies | 27% ± 10% | |
endothelial cell | 33 studies | 28% ± 12% | |
macrophage | 31 studies | 31% ± 10% | |
endothelial cell of lymphatic vessel | 19 studies | 32% ± 10% | |
pericyte | 18 studies | 23% ± 9% | |
oligodendrocyte | 16 studies | 46% ± 17% | |
non-classical monocyte | 15 studies | 24% ± 9% | |
astrocyte | 15 studies | 26% ± 11% | |
plasmacytoid dendritic cell | 13 studies | 36% ± 10% | |
epithelial cell | 13 studies | 32% ± 20% | |
oligodendrocyte precursor cell | 13 studies | 40% ± 16% | |
smooth muscle cell | 12 studies | 21% ± 5% | |
monocyte | 11 studies | 22% ± 5% | |
type I pneumocyte | 10 studies | 30% ± 9% | |
connective tissue cell | 9 studies | 28% ± 12% | |
GABAergic neuron | 9 studies | 34% ± 18% | |
capillary endothelial cell | 9 studies | 21% ± 5% | |
neuron | 9 studies | 36% ± 15% | |
vein endothelial cell | 9 studies | 27% ± 12% | |
myofibroblast cell | 9 studies | 28% ± 8% | |
alveolar macrophage | 8 studies | 26% ± 10% | |
ciliated cell | 8 studies | 26% ± 10% | |
endothelial cell of artery | 8 studies | 20% ± 3% | |
goblet cell | 8 studies | 29% ± 13% | |
microglial cell | 8 studies | 26% ± 11% | |
myeloid cell | 8 studies | 30% ± 13% | |
basal cell | 8 studies | 33% ± 13% | |
classical monocyte | 7 studies | 23% ± 8% | |
glutamatergic neuron | 7 studies | 41% ± 24% | |
endothelial cell of vascular tree | 7 studies | 21% ± 7% | |
amacrine cell | 7 studies | 36% ± 10% | |
retinal rod cell | 7 studies | 26% ± 5% | |
interneuron | 6 studies | 35% ± 19% | |
retinal ganglion cell | 6 studies | 44% ± 24% | |
type II pneumocyte | 6 studies | 26% ± 10% | |
plasma cell | 5 studies | 28% ± 13% | |
secretory cell | 5 studies | 24% ± 4% | |
conventional dendritic cell | 5 studies | 18% ± 2% | |
abnormal cell | 5 studies | 22% ± 7% | |
glial cell | 5 studies | 30% ± 16% | |
adventitial cell | 5 studies | 25% ± 4% | |
Mueller cell | 5 studies | 26% ± 2% | |
adipocyte | 5 studies | 30% ± 23% | |
pancreatic A cell | 4 studies | 61% ± 18% | |
type B pancreatic cell | 4 studies | 50% ± 27% | |
retinal bipolar neuron | 4 studies | 32% ± 10% | |
brush cell | 4 studies | 26% ± 6% | |
club cell | 4 studies | 25% ± 3% | |
retinal cone cell | 4 studies | 34% ± 15% | |
OFF-bipolar cell | 4 studies | 28% ± 7% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 24% ± 4% | |
hepatocyte | 4 studies | 50% ± 16% | |
luminal cell of prostate epithelium | 4 studies | 37% ± 5% | |
enteroendocrine cell | 4 studies | 32% ± 10% | |
ionocyte | 3 studies | 45% ± 2% | |
respiratory goblet cell | 3 studies | 25% ± 7% | |
pancreatic D cell | 3 studies | 61% ± 24% | |
plasmablast | 3 studies | 33% ± 20% | |
glomerular endothelial cell | 3 studies | 28% ± 3% | |
neural crest cell | 3 studies | 26% ± 8% | |
granule cell | 3 studies | 27% ± 8% | |
progenitor cell | 3 studies | 28% ± 10% | |
retina horizontal cell | 3 studies | 29% ± 2% | |
mononuclear phagocyte | 3 studies | 24% ± 5% | |
tissue-resident macrophage | 3 studies | 31% ± 10% | |
lymphocyte | 3 studies | 23% ± 7% | |
GABAergic amacrine cell | 3 studies | 39% ± 10% | |
ON-bipolar cell | 3 studies | 31% ± 5% | |
glycinergic amacrine cell | 3 studies | 30% ± 4% | |
rod bipolar cell | 3 studies | 52% ± 7% | |
intermediate monocyte | 3 studies | 26% ± 12% | |
pancreatic ductal cell | 3 studies | 63% ± 24% | |
enterocyte | 3 studies | 19% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 18 studies | 33% ± 18% | |
lung | 12 studies | 24% ± 7% | |
eye | 9 studies | 28% ± 9% | |
intestine | 6 studies | 22% ± 8% | |
pancreas | 4 studies | 53% ± 24% | |
peripheral blood | 3 studies | 23% ± 3% | |
liver | 3 studies | 24% ± 9% | |
adipose | 3 studies | 19% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 12319.00 | 459 / 459 | 100% | 63.30 | 1118 / 1118 |
prostate | 100% | 14920.54 | 245 / 245 | 100% | 100.56 | 502 / 502 |
brain | 100% | 10912.90 | 2641 / 2642 | 100% | 73.29 | 705 / 705 |
lung | 100% | 18465.25 | 578 / 578 | 100% | 47.17 | 1154 / 1155 |
uterus | 100% | 12300.88 | 170 / 170 | 100% | 34.56 | 457 / 459 |
pancreas | 100% | 8313.22 | 328 / 328 | 99% | 45.73 | 177 / 178 |
thymus | 100% | 11725.73 | 653 / 653 | 99% | 65.62 | 601 / 605 |
liver | 100% | 9661.69 | 226 / 226 | 99% | 36.50 | 403 / 406 |
kidney | 100% | 8821.98 | 89 / 89 | 99% | 48.12 | 894 / 901 |
bladder | 100% | 14453.10 | 21 / 21 | 99% | 39.48 | 499 / 504 |
esophagus | 100% | 9196.66 | 1445 / 1445 | 99% | 41.04 | 181 / 183 |
skin | 100% | 11468.18 | 1807 / 1809 | 99% | 67.04 | 466 / 472 |
stomach | 100% | 11070.03 | 359 / 359 | 99% | 37.34 | 282 / 286 |
intestine | 100% | 12425.40 | 966 / 966 | 98% | 36.39 | 519 / 527 |
ovary | 100% | 13263.97 | 180 / 180 | 98% | 30.68 | 423 / 430 |
adrenal gland | 100% | 8730.47 | 258 / 258 | 98% | 33.57 | 225 / 230 |
adipose | 100% | 13338.54 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 14461.07 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 14863.97 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 8831.45 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 29.90 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.98 | 1 / 1 |
heart | 99% | 7967.74 | 849 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 84% | 19.19 | 67 / 80 |
lymph node | 0% | 0 | 0 / 0 | 79% | 14.78 | 23 / 29 |
peripheral blood | 22% | 646.19 | 209 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007605 | Biological process | sensory perception of sound |
GO_0006622 | Biological process | protein targeting to lysosome |
GO_0010976 | Biological process | positive regulation of neuron projection development |
GO_0006898 | Biological process | receptor-mediated endocytosis |
GO_1904978 | Biological process | regulation of endosome organization |
GO_0099638 | Biological process | endosome to plasma membrane protein transport |
GO_0046718 | Biological process | symbiont entry into host cell |
GO_1905671 | Biological process | regulation of lysosome organization |
GO_0043470 | Biological process | regulation of carbohydrate catabolic process |
GO_0015917 | Biological process | aminophospholipid transport |
GO_1905123 | Biological process | regulation of glucosylceramidase activity |
GO_2000752 | Biological process | regulation of glucosylceramide catabolic process |
GO_0031902 | Cellular component | late endosome membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0030666 | Cellular component | endocytic vesicle membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0030669 | Cellular component | clathrin-coated endocytic vesicle membrane |
GO_0005925 | Cellular component | focal adhesion |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0010008 | Cellular component | endosome membrane |
GO_0043202 | Cellular component | lysosomal lumen |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0019899 | Molecular function | enzyme binding |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0015485 | Molecular function | cholesterol binding |
GO_0004888 | Molecular function | transmembrane signaling receptor activity |
GO_0038024 | Molecular function | cargo receptor activity |
GO_0001786 | Molecular function | phosphatidylserine binding |
GO_0001618 | Molecular function | virus receptor activity |
GO_0005044 | Molecular function | scavenger receptor activity |
GO_0051087 | Molecular function | protein-folding chaperone binding |
GO_0031210 | Molecular function | phosphatidylcholine binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SCARB2 |
Protein name | Alternative protein SCARB2 Scavenger receptor class B member 2 Lysosome membrane protein 2 (85 kDa lysosomal membrane sialoglycoprotein) (LGP85) (CD36 antigen-like 2) (Lysosome membrane protein II) (LIMP II) (Scavenger receptor class B member 2) (CD antigen CD36) |
Synonyms | LIMP2 CD36L2 LIMPII |
Description | FUNCTION: Acts as a lysosomal receptor for glucosylceramidase (GBA1) targeting. .; FUNCTION: (Microbial infection) Acts as a receptor for enterovirus 71. . |
Accessions | A0A1W2PPX6 A0A1W2PRF6 Q14108 ENST00000638663.1 D6RDG0 ENST00000264896.8 [Q14108-1] ENST00000638603.1 ENST00000640880.1 A0A1W2PS43 ENST00000639715.1 A0A1W2PQB7 A0A1W2PNX7 ENST00000639300.1 ENST00000640341.1 A0A1W2PPU6 ENST00000638295.1 ENST00000639145.1 L0R538 A0A1W2PS70 ENST00000640634.1 ENST00000640640.1 ENST00000640957.1 ENST00000509994.2 A0A1W2PSE4 A0A1W2PQR6 ENST00000452464.6 [Q14108-2] A0A1W2PPX5 ENST00000639738.1 A0A1W2PQL5 A0A1W2PRS1 |