Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 23 studies | 39% ± 16% | |
astrocyte | 18 studies | 48% ± 23% | |
oligodendrocyte | 14 studies | 48% ± 17% | |
microglial cell | 14 studies | 44% ± 17% | |
oligodendrocyte precursor cell | 13 studies | 49% ± 19% | |
fibroblast | 12 studies | 32% ± 12% | |
glutamatergic neuron | 11 studies | 60% ± 24% | |
macrophage | 11 studies | 37% ± 17% | |
GABAergic neuron | 10 studies | 58% ± 25% | |
B cell | 9 studies | 24% ± 7% | |
smooth muscle cell | 9 studies | 30% ± 9% | |
type I pneumocyte | 8 studies | 40% ± 20% | |
retinal rod cell | 8 studies | 69% ± 21% | |
epithelial cell | 8 studies | 38% ± 15% | |
adipocyte | 8 studies | 37% ± 10% | |
endothelial cell of lymphatic vessel | 8 studies | 46% ± 16% | |
neuron | 7 studies | 52% ± 22% | |
pericyte | 7 studies | 31% ± 12% | |
retinal cone cell | 7 studies | 68% ± 23% | |
mast cell | 7 studies | 24% ± 9% | |
basal cell | 7 studies | 33% ± 17% | |
retinal ganglion cell | 6 studies | 45% ± 25% | |
amacrine cell | 6 studies | 44% ± 19% | |
retina horizontal cell | 6 studies | 45% ± 21% | |
type II pneumocyte | 6 studies | 46% ± 16% | |
capillary endothelial cell | 5 studies | 22% ± 5% | |
retinal bipolar neuron | 5 studies | 35% ± 12% | |
interneuron | 5 studies | 73% ± 21% | |
cardiac muscle cell | 5 studies | 56% ± 14% | |
dendritic cell | 5 studies | 23% ± 5% | |
Mueller cell | 5 studies | 37% ± 18% | |
T cell | 5 studies | 31% ± 8% | |
myeloid cell | 5 studies | 29% ± 7% | |
monocyte | 5 studies | 27% ± 8% | |
effector memory CD8-positive, alpha-beta T cell | 4 studies | 22% ± 5% | |
glial cell | 4 studies | 31% ± 11% | |
granule cell | 4 studies | 51% ± 7% | |
plasma cell | 4 studies | 33% ± 7% | |
CD4-positive, alpha-beta T cell | 4 studies | 24% ± 4% | |
mesothelial cell | 4 studies | 35% ± 11% | |
ciliated cell | 4 studies | 25% ± 9% | |
lymphocyte | 4 studies | 34% ± 13% | |
natural killer cell | 4 studies | 25% ± 7% | |
club cell | 4 studies | 44% ± 11% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 25% ± 7% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 3 studies | 23% ± 5% | |
progenitor cell | 3 studies | 35% ± 8% | |
CD8-positive, alpha-beta T cell | 3 studies | 21% ± 4% | |
vein endothelial cell | 3 studies | 40% ± 21% | |
GABAergic amacrine cell | 3 studies | 57% ± 16% | |
OFF-bipolar cell | 3 studies | 47% ± 22% | |
ON-bipolar cell | 3 studies | 45% ± 20% | |
glycinergic amacrine cell | 3 studies | 48% ± 10% | |
rod bipolar cell | 3 studies | 45% ± 22% | |
endothelial cell of vascular tree | 3 studies | 42% ± 18% | |
hepatocyte | 3 studies | 57% ± 15% | |
retinal pigment epithelial cell | 3 studies | 46% ± 28% | |
abnormal cell | 3 studies | 30% ± 20% | |
alveolar macrophage | 3 studies | 29% ± 5% | |
respiratory goblet cell | 3 studies | 37% ± 16% | |
transit amplifying cell | 3 studies | 40% ± 29% | |
mucus secreting cell | 3 studies | 36% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2067.70 | 2642 / 2642 | 100% | 11.93 | 702 / 705 |
esophagus | 100% | 1275.10 | 1445 / 1445 | 99% | 6.56 | 182 / 183 |
thymus | 100% | 1738.03 | 653 / 653 | 97% | 9.61 | 589 / 605 |
lung | 99% | 1179.31 | 575 / 578 | 94% | 4.74 | 1082 / 1155 |
prostate | 100% | 1104.89 | 245 / 245 | 93% | 5.28 | 467 / 502 |
pancreas | 99% | 748.30 | 326 / 328 | 92% | 4.71 | 164 / 178 |
breast | 100% | 1353.39 | 459 / 459 | 91% | 5.34 | 1022 / 1118 |
uterus | 100% | 1445.92 | 170 / 170 | 88% | 5.42 | 406 / 459 |
skin | 100% | 1439.62 | 1806 / 1809 | 88% | 5.09 | 414 / 472 |
stomach | 100% | 942.42 | 359 / 359 | 87% | 3.72 | 249 / 286 |
kidney | 100% | 975.40 | 89 / 89 | 86% | 5.22 | 774 / 901 |
ovary | 100% | 1645.91 | 180 / 180 | 86% | 3.39 | 369 / 430 |
adrenal gland | 99% | 1070.61 | 255 / 258 | 84% | 8.27 | 193 / 230 |
intestine | 100% | 1279.03 | 966 / 966 | 81% | 3.35 | 427 / 527 |
bladder | 100% | 1191.86 | 21 / 21 | 77% | 3.13 | 388 / 504 |
liver | 88% | 431.12 | 200 / 226 | 61% | 2.27 | 249 / 406 |
adipose | 100% | 1205.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1996.13 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1826.22 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 850.93 | 241 / 241 | 0% | 0 | 0 / 0 |
heart | 94% | 1606.52 | 811 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 5.02 | 40 / 45 |
peripheral blood | 66% | 447.60 | 610 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 60% | 2.62 | 48 / 80 |
lymph node | 0% | 0 | 0 / 0 | 59% | 2.32 | 17 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007283 | Biological process | spermatogenesis |
GO_0060041 | Biological process | retina development in camera-type eye |
GO_0072520 | Biological process | seminiferous tubule development |
GO_0001547 | Biological process | antral ovarian follicle growth |
GO_0016607 | Cellular component | nuclear speck |
GO_0061827 | Cellular component | sperm head |
GO_1990917 | Cellular component | ooplasm |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005515 | Molecular function | protein binding |
GO_0003676 | Molecular function | nucleic acid binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | SCAPER |
Protein name | S-phase cyclin A associated protein in the ER S phase cyclin A-associated protein in the endoplasmic reticulum (S phase cyclin A-associated protein in the ER) (Zinc finger protein 291) SCAPER protein |
Synonyms | ZNF291 MSTP063 KIAA1454 |
Description | FUNCTION: CCNA2/CDK2 regulatory protein that transiently maintains CCNA2 in the cytoplasm. . |
Accessions | ENST00000564022.1 Q9BY12 H3BQ61 ENST00000564757.5 ENST00000563290.6 [Q9BY12-1] H3BT27 ENST00000564590.5 ENST00000563919.1 ENST00000568382.5 H3BTY2 ENST00000568549.5 H3BR40 ENST00000564177.1 ENST00000565970.5 Q6NSF1 ENST00000538941.6 [Q9BY12-3] ENST00000324767.11 [Q9BY12-1] H3BU24 ENST00000565507.5 H3BS25 ENST00000565372.5 H3BPB0 H3BTL8 H3BPM0 H3BQF3 |