SAFB2 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	17 studies	24% ± 8%	Explore
natural killer cell	16 studies	20% ± 5%	Explore
B cell	15 studies	21% ± 4%	Explore
CD8-positive, alpha-beta T cell	11 studies	20% ± 3%	Explore
astrocyte	11 studies	32% ± 14%	Explore
memory B cell	11 studies	20% ± 3%	Explore
naive B cell	10 studies	21% ± 4%	Explore
CD4-positive, alpha-beta T cell	10 studies	20% ± 3%	Explore
regulatory T cell	10 studies	21% ± 4%	Explore
T cell	9 studies	20% ± 4%	Explore
fibroblast	9 studies	21% ± 5%	Explore
gamma-delta T cell	9 studies	25% ± 8%	Explore
CD16-negative, CD56-bright natural killer cell, human	8 studies	20% ± 4%	Explore
CD16-positive, CD56-dim natural killer cell, human	8 studies	21% ± 5%	Explore
CD8-positive, alpha-beta memory T cell	8 studies	23% ± 5%	Explore
macrophage	8 studies	21% ± 4%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	7 studies	21% ± 4%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	7 studies	20% ± 5%	Explore
mature NK T cell	7 studies	19% ± 1%	Explore
smooth muscle cell	7 studies	18% ± 2%	Explore
mucosal invariant T cell	7 studies	21% ± 4%	Explore
epithelial cell	7 studies	35% ± 17%	Explore
classical monocyte	6 studies	23% ± 9%	Explore
effector memory CD8-positive, alpha-beta T cell	6 studies	24% ± 6%	Explore
glutamatergic neuron	6 studies	36% ± 19%	Explore
basal cell	6 studies	22% ± 7%	Explore
plasmacytoid dendritic cell	6 studies	22% ± 8%	Explore
interneuron	5 studies	33% ± 22%	Explore
pericyte	5 studies	18% ± 3%	Explore
innate lymphoid cell	5 studies	21% ± 3%	Explore
myeloid cell	5 studies	23% ± 8%	Explore
ciliated cell	5 studies	27% ± 10%	Explore
GABAergic neuron	5 studies	36% ± 15%	Explore
oligodendrocyte precursor cell	5 studies	27% ± 8%	Explore
goblet cell	5 studies	24% ± 13%	Explore
oligodendrocyte	5 studies	24% ± 4%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	21% ± 5%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	18% ± 1%	Explore
microglial cell	4 studies	26% ± 5%	Explore
neuron	4 studies	24% ± 9%	Explore
dendritic cell	4 studies	32% ± 16%	Explore
abnormal cell	4 studies	24% ± 5%	Explore
monocyte	4 studies	17% ± 1%	Explore
mast cell	3 studies	17% ± 2%	Explore
type B pancreatic cell	3 studies	32% ± 2%	Explore
leukocyte	3 studies	19% ± 2%	Explore
conventional dendritic cell	3 studies	34% ± 12%	Explore
hematopoietic precursor cell	3 studies	23% ± 8%	Explore
non-classical monocyte	3 studies	33% ± 10%	Explore
plasmablast	3 studies	35% ± 12%	Explore
capillary endothelial cell	3 studies	17% ± 2%	Explore
retinal bipolar neuron	3 studies	23% ± 5%	Explore
precursor B cell	3 studies	22% ± 2%	Explore
myofibroblast cell	3 studies	16% ± 1%	Explore
amacrine cell	3 studies	21% ± 6%	Explore
retina horizontal cell	3 studies	21% ± 6%	Explore
lymphocyte	3 studies	28% ± 7%	Explore
Mueller cell	3 studies	25% ± 11%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	28% ± 6%	Explore
T follicular helper cell	3 studies	23% ± 1%	Explore
endothelial cell of vascular tree	3 studies	18% ± 3%	Explore
transit amplifying cell	3 studies	25% ± 10%	Explore
brush cell	3 studies	23% ± 6%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	9 studies	30% ± 13%	Explore
peripheral blood	8 studies	23% ± 7%	Explore
lung	6 studies	18% ± 2%	Explore
eye	4 studies	24% ± 5%	Explore
kidney	4 studies	16% ± 0%	Explore
liver	4 studies	22% ± 7%	Explore
pancreas	3 studies	27% ± 5%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	4943.80	1445 / 1445	100%	26.66	183 / 183
intestine	100%	5704.37	966 / 966	100%	28.64	527 / 527
pancreas	100%	3048.71	328 / 328	100%	34.07	178 / 178
prostate	100%	8331.27	245 / 245	100%	50.09	502 / 502
skin	100%	4039.27	1809 / 1809	100%	34.72	472 / 472
thymus	100%	7347.27	653 / 653	100%	48.06	605 / 605
uterus	100%	8016.75	170 / 170	100%	35.92	459 / 459
liver	100%	3058.60	226 / 226	100%	22.93	405 / 406
kidney	100%	6389.82	89 / 89	100%	37.62	898 / 901
adrenal gland	100%	5805.37	258 / 258	100%	39.02	229 / 230
brain	100%	6130.46	2639 / 2642	100%	62.43	702 / 705
bladder	100%	5338.19	21 / 21	99%	31.95	501 / 504
breast	100%	4763.68	459 / 459	99%	30.48	1111 / 1118
stomach	100%	3873.11	359 / 359	99%	26.90	284 / 286
ovary	100%	9511.51	180 / 180	99%	23.15	426 / 430
lung	100%	5115.93	578 / 578	99%	27.10	1140 / 1155
adipose	100%	4519.78	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	47.82	29 / 29
muscle	100%	3832.59	803 / 803	0%	0	0 / 0
spleen	100%	7219.50	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	32.54	45 / 45
ureter	0%	0	0 / 0	100%	31.73	1 / 1
blood vessel	100%	4693.89	1334 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	99%	28.71	79 / 80
heart	99%	3524.79	850 / 861	0%	0	0 / 0
peripheral blood	97%	3390.35	905 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0050684	Biological process	regulation of mRNA processing
GO_0060765	Biological process	regulation of androgen receptor signaling pathway
GO_0060008	Biological process	Sertoli cell differentiation
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0043231	Cellular component	intracellular membrane-bounded organelle
GO_0070062	Cellular component	extracellular exosome
GO_0016604	Cellular component	nuclear body
GO_0005654	Cellular component	nucleoplasm
GO_0005737	Cellular component	cytoplasm
GO_0005634	Cellular component	nucleus
GO_0003723	Molecular function	RNA binding
GO_0042802	Molecular function	identical protein binding
GO_0005515	Molecular function	protein binding
GO_0043565	Molecular function	sequence-specific DNA binding

IV. Literature review

[source]

Gene name	SAFB2
Protein name	Scaffold attachment factor B2 SAFB2 protein Scaffold attachment factor B2 (SAF-B2)
Synonyms	KIAA0138
Description	FUNCTION: Binds to scaffold/matrix attachment region (S/MAR) DNA. Can function as an estrogen receptor corepressor and can also inhibit cell proliferation.
Accessions	K7ERX3 ENST00000252542.9 [Q14151-1] A0PJ47 ENST00000590262.1 ENST00000591123.5 Q14151 ENST00000591120.1 [Q14151-2] K7EQU4

SAFB2 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review