Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2108.14 | 459 / 459 | 100% | 38.96 | 1118 / 1118 |
esophagus | 100% | 2000.60 | 1445 / 1445 | 100% | 41.97 | 183 / 183 |
prostate | 100% | 1979.36 | 245 / 245 | 100% | 24.84 | 502 / 502 |
uterus | 100% | 2496.72 | 170 / 170 | 100% | 38.65 | 459 / 459 |
intestine | 100% | 2029.60 | 966 / 966 | 100% | 35.02 | 526 / 527 |
bladder | 100% | 2193.14 | 21 / 21 | 100% | 33.46 | 503 / 504 |
skin | 100% | 2931.79 | 1809 / 1809 | 100% | 48.33 | 471 / 472 |
stomach | 100% | 1655.33 | 359 / 359 | 100% | 37.11 | 285 / 286 |
brain | 100% | 1597.64 | 2635 / 2642 | 100% | 28.49 | 704 / 705 |
ovary | 100% | 3024.27 | 180 / 180 | 100% | 31.43 | 428 / 430 |
lung | 100% | 1771.33 | 577 / 578 | 100% | 33.00 | 1151 / 1155 |
thymus | 100% | 1788.81 | 653 / 653 | 99% | 23.85 | 601 / 605 |
pancreas | 100% | 1367.08 | 327 / 328 | 98% | 21.91 | 175 / 178 |
liver | 100% | 1372.41 | 226 / 226 | 95% | 16.35 | 385 / 406 |
adrenal gland | 100% | 1723.62 | 258 / 258 | 94% | 15.47 | 216 / 230 |
kidney | 100% | 1155.61 | 89 / 89 | 93% | 16.02 | 837 / 901 |
adipose | 100% | 2221.21 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1675.33 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 34.73 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 51.67 | 29 / 29 |
muscle | 100% | 1894.63 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2759.39 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 40.51 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 22.10 | 1 / 1 |
heart | 98% | 984.67 | 846 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 80% | 1710.09 | 743 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0034260 | Biological process | negative regulation of GTPase activity |
GO_0006397 | Biological process | mRNA processing |
GO_0098586 | Biological process | cellular response to virus |
GO_0008380 | Biological process | RNA splicing |
GO_0043923 | Biological process | positive regulation by host of viral transcription |
GO_0006915 | Biological process | apoptotic process |
GO_0043484 | Biological process | regulation of RNA splicing |
GO_0043065 | Biological process | positive regulation of apoptotic process |
GO_0006364 | Biological process | rRNA processing |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005730 | Cellular component | nucleolus |
GO_0001652 | Cellular component | granular component |
GO_0000792 | Cellular component | heterochromatin |
GO_0000791 | Cellular component | euchromatin |
GO_0005654 | Cellular component | nucleoplasm |
GO_0030688 | Cellular component | preribosome, small subunit precursor |
GO_0005829 | Cellular component | cytosol |
GO_0005694 | Cellular component | chromosome |
GO_0005634 | Cellular component | nucleus |
GO_0003723 | Molecular function | RNA binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | RRP1B |
Protein name | Ribosomal RNA processing protein 1 homolog B (RRP1-like protein B) RRP1B protein |
Synonyms | KIAA0179 |
Description | FUNCTION: Positively regulates DNA damage-induced apoptosis by acting as a transcriptional coactivator of proapoptotic target genes of the transcriptional activator E2F1 . Likely to play a role in ribosome biogenesis by targeting serine/threonine protein phosphatase PP1 to the nucleolus . Involved in regulation of mRNA splicing (By similarity). Inhibits SIPA1 GTPase activity (By similarity). Involved in regulating expression of extracellular matrix genes (By similarity). Associates with chromatin and may play a role in modulating chromatin structure . .; FUNCTION: (Microbial infection) Following influenza A virus (IAV) infection, promotes viral mRNA transcription by facilitating the binding of IAV RNA-directed RNA polymerase to capped mRNA. . |
Accessions | Q14684 ENST00000340648.6 [Q14684-1] Q6PJM8 |