RBM42 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
natural killer cell	14 studies	21% ± 7%	Explore
endothelial cell	10 studies	27% ± 9%	Explore
CD8-positive, alpha-beta T cell	10 studies	21% ± 3%	Explore
fibroblast	10 studies	26% ± 7%	Explore
smooth muscle cell	8 studies	25% ± 8%	Explore
pericyte	8 studies	25% ± 8%	Explore
CD4-positive, alpha-beta T cell	7 studies	20% ± 3%	Explore
classical monocyte	7 studies	22% ± 7%	Explore
CD16-positive, CD56-dim natural killer cell, human	7 studies	20% ± 6%	Explore
B cell	7 studies	20% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	6 studies	20% ± 4%	Explore
conventional dendritic cell	6 studies	28% ± 13%	Explore
non-classical monocyte	6 studies	24% ± 8%	Explore
myofibroblast cell	6 studies	24% ± 4%	Explore
connective tissue cell	6 studies	24% ± 6%	Explore
epithelial cell	6 studies	38% ± 18%	Explore
ciliated cell	6 studies	31% ± 7%	Explore
regulatory T cell	6 studies	19% ± 2%	Explore
plasmacytoid dendritic cell	6 studies	23% ± 6%	Explore
T cell	5 studies	18% ± 3%	Explore
mature NK T cell	5 studies	17% ± 1%	Explore
gamma-delta T cell	5 studies	24% ± 15%	Explore
plasmablast	4 studies	43% ± 18%	Explore
capillary endothelial cell	4 studies	23% ± 7%	Explore
endothelial cell of lymphatic vessel	4 studies	25% ± 5%	Explore
macrophage	4 studies	24% ± 8%	Explore
precursor B cell	4 studies	26% ± 8%	Explore
type I pneumocyte	4 studies	24% ± 5%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	17% ± 1%	Explore
basal cell	4 studies	30% ± 12%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	22% ± 8%	Explore
memory B cell	4 studies	17% ± 1%	Explore
hematopoietic precursor cell	3 studies	27% ± 5%	Explore
neural crest cell	3 studies	18% ± 2%	Explore
myeloid cell	3 studies	19% ± 5%	Explore
pro-B cell	3 studies	26% ± 4%	Explore
erythroblast	3 studies	29% ± 17%	Explore
abnormal cell	3 studies	25% ± 7%	Explore
effector CD4-positive, alpha-beta T cell	3 studies	19% ± 2%	Explore
effector CD8-positive, alpha-beta T cell	3 studies	24% ± 5%	Explore
endothelial cell of vascular tree	3 studies	21% ± 3%	Explore
exhausted T cell	3 studies	19% ± 3%	Explore
dendritic cell	3 studies	40% ± 9%	Explore
enteroendocrine cell	3 studies	25% ± 12%	Explore
goblet cell	3 studies	23% ± 6%	Explore
naive B cell	3 studies	19% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	3 studies	20% ± 1%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	7 studies	24% ± 7%	Explore
peripheral blood	6 studies	18% ± 5%	Explore
kidney	3 studies	17% ± 1%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	4075.84	1445 / 1445	100%	92.13	183 / 183
liver	100%	2129.01	226 / 226	100%	115.49	406 / 406
ovary	100%	3766.17	180 / 180	100%	140.47	430 / 430
thymus	100%	3962.60	653 / 653	100%	137.65	605 / 605
uterus	100%	4442.61	170 / 170	100%	190.59	459 / 459
brain	100%	2638.96	2637 / 2642	100%	119.65	705 / 705
kidney	100%	3499.40	89 / 89	99%	91.45	896 / 901
skin	100%	4532.64	1809 / 1809	99%	157.29	469 / 472
stomach	100%	2888.43	359 / 359	99%	119.43	284 / 286
intestine	100%	3909.75	966 / 966	99%	132.39	523 / 527
prostate	100%	4216.33	245 / 245	99%	126.62	498 / 502
pancreas	100%	1607.40	327 / 328	99%	132.17	177 / 178
adrenal gland	100%	3379.79	258 / 258	99%	108.12	228 / 230
breast	100%	4166.41	459 / 459	99%	111.74	1104 / 1118
bladder	100%	4148.29	21 / 21	98%	156.63	496 / 504
lung	100%	3524.92	577 / 578	99%	118.54	1138 / 1155
adipose	100%	4059.78	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	162.81	80 / 80
lymph node	0%	0	0 / 0	100%	216.94	29 / 29
spleen	100%	3787.50	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	152.00	45 / 45
ureter	0%	0	0 / 0	100%	116.91	1 / 1
blood vessel	100%	4320.18	1334 / 1335	0%	0	0 / 0
muscle	100%	3187.17	802 / 803	0%	0	0 / 0
heart	99%	2514.09	855 / 861	0%	0	0 / 0
peripheral blood	99%	3186.62	919 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0000398	Biological process	mRNA splicing, via spliceosome
GO_0048025	Biological process	negative regulation of mRNA splicing, via spliceosome
GO_0046540	Cellular component	U4/U6 x U5 tri-snRNP complex
GO_0005654	Cellular component	nucleoplasm
GO_0005737	Cellular component	cytoplasm
GO_0005634	Cellular component	nucleus
GO_0005515	Molecular function	protein binding
GO_0003729	Molecular function	mRNA binding
GO_0003723	Molecular function	RNA binding

IV. Literature review

[source]

Gene name	RBM42
Protein name	RNA-binding protein 42 (RNA-binding motif protein 42) RNA binding motif protein 42
Synonyms
Description	FUNCTION: Binds (via the RRM domain) to the 3'-untranslated region (UTR) of CDKN1A mRNA. .
Accessions	K7EP90 ENST00000592202.5 Q9BTD8 ENST00000262633.9 [Q9BTD8-1] K7EQ03 ENST00000589871.1 K7ER08 K7EML2 ENST00000589559.5 ENST00000586618.5 ENST00000588161.5 [Q9BTD8-2]

RBM42 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review