Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 10 studies | 59% ± 24% | |
neuron | 7 studies | 41% ± 20% | |
endothelial cell | 7 studies | 30% ± 14% | |
astrocyte | 7 studies | 22% ± 3% | |
oligodendrocyte precursor cell | 7 studies | 29% ± 11% | |
GABAergic neuron | 6 studies | 40% ± 18% | |
retinal ganglion cell | 5 studies | 65% ± 30% | |
vein endothelial cell | 5 studies | 25% ± 4% | |
endothelial cell of vascular tree | 5 studies | 22% ± 7% | |
interneuron | 4 studies | 36% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 10 studies | 38% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 21647.17 | 2629 / 2642 | 98% | 109.51 | 694 / 705 |
prostate | 84% | 1688.98 | 206 / 245 | 89% | 12.15 | 446 / 502 |
adrenal gland | 79% | 1432.77 | 204 / 258 | 91% | 83.02 | 210 / 230 |
breast | 98% | 3348.97 | 450 / 459 | 65% | 14.38 | 729 / 1118 |
uterus | 94% | 2798.77 | 159 / 170 | 39% | 10.54 | 181 / 459 |
lung | 68% | 1161.89 | 395 / 578 | 48% | 18.05 | 554 / 1155 |
esophagus | 72% | 2053.15 | 1037 / 1445 | 41% | 13.48 | 75 / 183 |
thymus | 85% | 1666.02 | 552 / 653 | 23% | 7.20 | 139 / 605 |
skin | 58% | 921.45 | 1045 / 1809 | 45% | 12.80 | 213 / 472 |
bladder | 90% | 2145.62 | 19 / 21 | 12% | 2.19 | 62 / 504 |
adipose | 97% | 3166.57 | 1172 / 1204 | 0% | 0 | 0 / 0 |
spleen | 97% | 3145.97 | 233 / 241 | 0% | 0 | 0 / 0 |
ovary | 77% | 1495.15 | 139 / 180 | 15% | 2.69 | 66 / 430 |
intestine | 75% | 1641.75 | 725 / 966 | 16% | 2.03 | 83 / 527 |
eye | 0% | 0 | 0 / 0 | 86% | 17.85 | 69 / 80 |
tonsil | 0% | 0 | 0 / 0 | 80% | 49.66 | 36 / 45 |
blood vessel | 75% | 1797.67 | 996 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 6% | 70.05 | 20 / 328 | 57% | 11.47 | 101 / 178 |
stomach | 38% | 900.77 | 136 / 359 | 23% | 3.11 | 65 / 286 |
kidney | 22% | 601.40 | 20 / 89 | 22% | 3.91 | 200 / 901 |
heart | 41% | 668.93 | 350 / 861 | 0% | 0 | 0 / 0 |
muscle | 38% | 592.96 | 303 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 31% | 3.15 | 9 / 29 |
liver | 1% | 17.07 | 2 / 226 | 12% | 1.97 | 47 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0010718 | Biological process | positive regulation of epithelial to mesenchymal transition |
GO_0007165 | Biological process | signal transduction |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0003190 | Biological process | atrioventricular valve formation |
GO_0007399 | Biological process | nervous system development |
GO_0030516 | Biological process | regulation of axon extension |
GO_0043065 | Biological process | positive regulation of apoptotic process |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_0060317 | Biological process | cardiac epithelial to mesenchymal transition |
GO_0023041 | Biological process | neuronal signal transduction |
GO_0043204 | Cellular component | perikaryon |
GO_0005615 | Cellular component | extracellular space |
GO_0030424 | Cellular component | axon |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0045202 | Cellular component | synapse |
GO_0043025 | Cellular component | neuronal cell body |
GO_0044295 | Cellular component | axonal growth cone |
GO_0005515 | Molecular function | protein binding |
Gene name | OLFM1 |
Protein name | Olfactomedin 1 Noelin (Neuronal olfactomedin-related ER localized protein) (Olfactomedin-1) OLFM1 protein NOELIN1_V4 (Olfactomedin 1, isoform CRA_d) NOELIN1_V5 (Olfactomedin 1) NOELIN1_V1 (Olfactomedin 1, isoform CRA_c) |
Synonyms | NOE1 hCG_20208 NOEL1 |
Description | FUNCTION: Contributes to the regulation of axonal growth in the embryonic and adult central nervous system by inhibiting interactions between RTN4R and LINGO1. Inhibits RTN4R-mediated axon growth cone collapse (By similarity). May play an important role in regulating the production of neural crest cells by the neural tube (By similarity). May be required for normal responses to olfactory stimuli (By similarity). . |
Accessions | F5GZQ2 F8W870 ENST00000277415.15 [Q99784-4] ENST00000545657.1 Q96BL8 Q6IMJ7 ENST00000371799.8 ENST00000539529.5 ENST00000392991.8 [Q99784-2] ENST00000371796.7 [Q99784-5] ENST00000252854.8 [Q99784-3] Q99784 Q6IMJ8 ENST00000339720.10 Q6IMJ6 F5H810 ENST00000371801.4 Q5VZL8 ENST00000371793.8 [Q99784-1] H0YFB9 Q9BWJ9 ENST00000539877.5 |