NCF1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
B cell	41 studies	46% ± 19%	Explore
macrophage	24 studies	29% ± 11%	Explore
classical monocyte	23 studies	54% ± 19%	Explore
plasmacytoid dendritic cell	23 studies	62% ± 18%	Explore
memory B cell	20 studies	50% ± 14%	Explore
naive B cell	20 studies	60% ± 16%	Explore
monocyte	19 studies	39% ± 13%	Explore
conventional dendritic cell	19 studies	31% ± 15%	Explore
non-classical monocyte	17 studies	33% ± 17%	Explore
plasma cell	16 studies	44% ± 19%	Explore
neutrophil	13 studies	51% ± 21%	Explore
CD4-positive, alpha-beta T cell	13 studies	24% ± 6%	Explore
CD8-positive, alpha-beta T cell	12 studies	22% ± 7%	Explore
plasmablast	10 studies	55% ± 20%	Explore
T cell	9 studies	21% ± 5%	Explore
dendritic cell	8 studies	27% ± 7%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	8 studies	19% ± 4%	Explore
myeloid cell	8 studies	39% ± 18%	Explore
regulatory T cell	8 studies	21% ± 3%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	6 studies	21% ± 5%	Explore
precursor B cell	6 studies	59% ± 22%	Explore
IgG plasma cell	5 studies	32% ± 19%	Explore
gamma-delta T cell	5 studies	23% ± 8%	Explore
mucosal invariant T cell	5 studies	18% ± 2%	Explore
immature B cell	5 studies	75% ± 20%	Explore
CD8-positive, alpha-beta memory T cell	5 studies	18% ± 2%	Explore
T follicular helper cell	5 studies	22% ± 6%	Explore
IgA plasma cell	4 studies	34% ± 18%	Explore
natural killer cell	4 studies	18% ± 2%	Explore
alveolar macrophage	4 studies	22% ± 10%	Explore
germinal center B cell	4 studies	60% ± 21%	Explore
intermediate monocyte	4 studies	53% ± 17%	Explore
CD4-positive, alpha-beta memory T cell	4 studies	19% ± 5%	Explore
mononuclear phagocyte	3 studies	43% ± 10%	Explore
leukocyte	3 studies	33% ± 6%	Explore
intraepithelial lymphocyte	3 studies	22% ± 3%	Explore
group 3 innate lymphoid cell	3 studies	18% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	16 studies	30% ± 9%	Explore
lymph node	4 studies	44% ± 14%	Explore
liver	3 studies	19% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
lung	100%	871.57	576 / 578	90%	4.38	1037 / 1155
intestine	78%	400.61	751 / 966	64%	2.42	336 / 527
breast	58%	84.73	268 / 459	81%	2.89	903 / 1118
kidney	55%	114.93	49 / 89	82%	3.41	735 / 901
esophagus	58%	91.25	841 / 1445	73%	2.25	133 / 183
stomach	52%	104.33	188 / 359	72%	3.50	206 / 286
bladder	62%	147.52	13 / 21	55%	2.95	277 / 504
thymus	54%	116.57	352 / 653	62%	2.25	374 / 605
lymph node	0%	0	0 / 0	100%	102.33	29 / 29
peripheral blood	100%	13989.60	929 / 929	0%	0	0 / 0
spleen	100%	4511.85	241 / 241	0%	0	0 / 0
prostate	60%	95.20	148 / 245	37%	0.71	188 / 502
ovary	18%	22.23	33 / 180	79%	2.99	341 / 430
uterus	30%	37.31	51 / 170	64%	2.27	296 / 459
brain	25%	37.81	657 / 2642	69%	2.70	484 / 705
liver	58%	87.65	130 / 226	34%	1.12	139 / 406
tonsil	0%	0	0 / 0	91%	5.86	41 / 45
pancreas	11%	15.33	37 / 328	79%	3.69	140 / 178
adrenal gland	60%	87.64	156 / 258	24%	0.44	55 / 230
adipose	83%	211.18	995 / 1204	0%	0	0 / 0
skin	5%	4.90	92 / 1809	74%	5.59	351 / 472
eye	0%	0	0 / 0	48%	1.53	38 / 80
blood vessel	47%	103.44	631 / 1335	0%	0	0 / 0
heart	41%	56.49	352 / 861	0%	0	0 / 0
muscle	2%	2.61	19 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1