Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 16 studies | 61% ± 17% | |
endothelial cell | 14 studies | 36% ± 15% | |
glutamatergic neuron | 13 studies | 46% ± 22% | |
epithelial cell | 11 studies | 34% ± 11% | |
fibroblast | 11 studies | 39% ± 10% | |
ciliated cell | 10 studies | 33% ± 18% | |
pericyte | 10 studies | 32% ± 13% | |
smooth muscle cell | 9 studies | 38% ± 17% | |
macrophage | 9 studies | 24% ± 8% | |
mast cell | 9 studies | 40% ± 11% | |
endothelial cell of lymphatic vessel | 9 studies | 44% ± 19% | |
type I pneumocyte | 7 studies | 55% ± 25% | |
basal cell | 7 studies | 37% ± 17% | |
mesothelial cell | 6 studies | 50% ± 19% | |
GABAergic neuron | 6 studies | 40% ± 9% | |
goblet cell | 6 studies | 38% ± 27% | |
club cell | 6 studies | 38% ± 17% | |
neuron | 5 studies | 49% ± 22% | |
interneuron | 5 studies | 36% ± 16% | |
plasma cell | 5 studies | 47% ± 19% | |
type II pneumocyte | 5 studies | 43% ± 6% | |
granule cell | 4 studies | 36% ± 7% | |
dendritic cell | 4 studies | 25% ± 4% | |
myeloid cell | 4 studies | 30% ± 15% | |
endothelial cell of vascular tree | 4 studies | 35% ± 18% | |
astrocyte | 4 studies | 29% ± 18% | |
hepatic stellate cell | 3 studies | 38% ± 13% | |
microglial cell | 3 studies | 29% ± 4% | |
oligodendrocyte precursor cell | 3 studies | 20% ± 3% | |
cholangiocyte | 3 studies | 53% ± 15% | |
hepatocyte | 3 studies | 32% ± 11% | |
enterocyte | 3 studies | 20% ± 4% | |
B cell | 3 studies | 22% ± 3% | |
T cell | 3 studies | 28% ± 13% | |
myofibroblast cell | 3 studies | 29% ± 8% | |
respiratory goblet cell | 3 studies | 53% ± 16% | |
lymphocyte | 3 studies | 28% ± 7% | |
mucus secreting cell | 3 studies | 44% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 5123.15 | 245 / 245 | 99% | 50.60 | 495 / 502 |
breast | 100% | 5931.02 | 458 / 459 | 97% | 61.37 | 1089 / 1118 |
stomach | 98% | 4949.36 | 353 / 359 | 99% | 124.40 | 282 / 286 |
lung | 99% | 8809.06 | 575 / 578 | 97% | 59.75 | 1119 / 1155 |
skin | 100% | 9956.54 | 1808 / 1809 | 96% | 116.58 | 453 / 472 |
thymus | 100% | 9737.77 | 653 / 653 | 95% | 99.30 | 576 / 605 |
pancreas | 95% | 3973.45 | 313 / 328 | 99% | 83.21 | 176 / 178 |
bladder | 100% | 5806.05 | 21 / 21 | 94% | 70.16 | 472 / 504 |
esophagus | 94% | 5350.80 | 1359 / 1445 | 99% | 79.79 | 182 / 183 |
kidney | 100% | 6625.66 | 89 / 89 | 91% | 46.97 | 824 / 901 |
uterus | 98% | 4984.72 | 167 / 170 | 90% | 44.63 | 412 / 459 |
ovary | 99% | 6254.68 | 179 / 180 | 81% | 24.75 | 349 / 430 |
intestine | 75% | 11506.67 | 726 / 966 | 99% | 135.40 | 523 / 527 |
adrenal gland | 100% | 7205.76 | 258 / 258 | 49% | 16.27 | 113 / 230 |
liver | 56% | 1480.44 | 127 / 226 | 55% | 19.25 | 225 / 406 |
blood vessel | 100% | 44312.89 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 151.21 | 80 / 80 |
tonsil | 0% | 0 | 0 / 0 | 100% | 48.58 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 16.28 | 1 / 1 |
adipose | 99% | 8069.51 | 1192 / 1204 | 0% | 0 | 0 / 0 |
spleen | 78% | 2297.32 | 187 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 62% | 17.59 | 18 / 29 |
heart | 45% | 1396.96 | 384 / 861 | 0% | 0 | 0 / 0 |
brain | 22% | 935.44 | 584 / 2642 | 15% | 3.58 | 109 / 705 |
peripheral blood | 16% | 600.12 | 149 / 929 | 0% | 0 | 0 / 0 |
muscle | 8% | 232.40 | 63 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006897 | Biological process | endocytosis |
GO_0030048 | Biological process | actin filament-based movement |
GO_0061502 | Biological process | early endosome to recycling endosome transport |
GO_0007015 | Biological process | actin filament organization |
GO_0015031 | Biological process | protein transport |
GO_0051641 | Biological process | cellular localization |
GO_0005903 | Cellular component | brush border |
GO_0005902 | Cellular component | microvillus |
GO_0043209 | Cellular component | myelin sheath |
GO_0005886 | Cellular component | plasma membrane |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0005769 | Cellular component | early endosome |
GO_0005790 | Cellular component | smooth endoplasmic reticulum |
GO_0043204 | Cellular component | perikaryon |
GO_0070062 | Cellular component | extracellular exosome |
GO_0043025 | Cellular component | neuronal cell body |
GO_0043005 | Cellular component | neuron projection |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0030673 | Cellular component | axolemma |
GO_0005938 | Cellular component | cell cortex |
GO_0005737 | Cellular component | cytoplasm |
GO_0097440 | Cellular component | apical dendrite |
GO_0030424 | Cellular component | axon |
GO_0005768 | Cellular component | endosome |
GO_0016459 | Cellular component | myosin complex |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0051015 | Molecular function | actin filament binding |
GO_0048306 | Molecular function | calcium-dependent protein binding |
GO_0000146 | Molecular function | microfilament motor activity |
GO_0005524 | Molecular function | ATP binding |
GO_0005516 | Molecular function | calmodulin binding |
Gene name | MYO1D |
Protein name | Unconventional myosin-Id MYO1D protein Myosin ID |
Synonyms | KIAA0727 |
Description | FUNCTION: Unconventional myosin that functions as actin-based motor protein with ATPase activity (By similarity). Plays a role in endosomal protein trafficking, and especially in the transfer of cargo proteins from early to recycling endosomes (By similarity). Required for normal planar cell polarity in ciliated tracheal cells, for normal rotational polarity of cilia, and for coordinated, unidirectional ciliary movement in the trachea. Required for normal, polarized cilia organization in brain ependymal epithelial cells (By similarity). . |
Accessions | O94832 K7EIG7 ENST00000577252.5 J3KRL0 ENST00000318217.10 J3QRN6 Q8N618 ENST00000579584.5 ENST00000583621.1 J3QRR2 ENST00000394649.8 |