Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 5 studies | 20% ± 5% | |
epithelial cell | 4 studies | 26% ± 7% | |
GABAergic neuron | 4 studies | 32% ± 10% | |
glutamatergic neuron | 3 studies | 45% ± 8% | |
dendritic cell | 3 studies | 25% ± 5% | |
endothelial cell | 3 studies | 19% ± 3% | |
transit amplifying cell | 3 studies | 37% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2384.94 | 459 / 459 | 100% | 15.55 | 1118 / 1118 |
esophagus | 100% | 1609.23 | 1445 / 1445 | 100% | 14.44 | 183 / 183 |
lung | 100% | 1751.00 | 578 / 578 | 100% | 13.26 | 1155 / 1155 |
ovary | 100% | 2379.91 | 180 / 180 | 100% | 12.40 | 430 / 430 |
prostate | 100% | 2022.95 | 245 / 245 | 100% | 12.97 | 502 / 502 |
bladder | 100% | 1858.62 | 21 / 21 | 100% | 13.03 | 503 / 504 |
uterus | 100% | 2507.83 | 170 / 170 | 100% | 14.83 | 458 / 459 |
thymus | 100% | 1929.30 | 653 / 653 | 100% | 11.03 | 602 / 605 |
intestine | 100% | 1814.68 | 966 / 966 | 99% | 12.44 | 524 / 527 |
stomach | 100% | 1346.79 | 359 / 359 | 99% | 13.35 | 284 / 286 |
brain | 99% | 1032.26 | 2613 / 2642 | 100% | 10.19 | 705 / 705 |
pancreas | 99% | 1225.49 | 326 / 328 | 99% | 9.87 | 177 / 178 |
kidney | 100% | 1137.87 | 89 / 89 | 98% | 9.12 | 883 / 901 |
adrenal gland | 100% | 1292.17 | 258 / 258 | 96% | 6.30 | 221 / 230 |
skin | 100% | 2620.06 | 1809 / 1809 | 96% | 11.20 | 452 / 472 |
liver | 100% | 687.88 | 226 / 226 | 88% | 5.16 | 357 / 406 |
adipose | 100% | 2111.96 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 14.48 | 29 / 29 |
spleen | 100% | 2483.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.37 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.38 | 1 / 1 |
blood vessel | 100% | 1504.48 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 831.97 | 794 / 803 | 0% | 0 | 0 / 0 |
heart | 96% | 817.69 | 830 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 1420.28 | 814 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 84% | 5.79 | 67 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032508 | Biological process | DNA duplex unwinding |
GO_0007062 | Biological process | sister chromatid cohesion |
GO_0006303 | Biological process | double-strand break repair via nonhomologous end joining |
GO_0006281 | Biological process | DNA repair |
GO_0008283 | Biological process | cell population proliferation |
GO_0007129 | Biological process | homologous chromosome pairing at meiosis |
GO_0006302 | Biological process | double-strand break repair |
GO_2001033 | Biological process | negative regulation of double-strand break repair via nonhomologous end joining |
GO_0007131 | Biological process | reciprocal meiotic recombination |
GO_0006974 | Biological process | DNA damage response |
GO_0110025 | Biological process | DNA strand resection involved in replication fork processing |
GO_0000724 | Biological process | double-strand break repair via homologous recombination |
GO_0007095 | Biological process | mitotic G2 DNA damage checkpoint signaling |
GO_0033674 | Biological process | positive regulation of kinase activity |
GO_0000729 | Biological process | DNA double-strand break processing |
GO_0044818 | Biological process | mitotic G2/M transition checkpoint |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0035825 | Biological process | homologous recombination |
GO_0032206 | Biological process | positive regulation of telomere maintenance |
GO_0062176 | Biological process | R-loop processing |
GO_0000723 | Biological process | telomere maintenance |
GO_0031954 | Biological process | positive regulation of protein autophosphorylation |
GO_0031573 | Biological process | mitotic intra-S DNA damage checkpoint signaling |
GO_0006310 | Biological process | DNA recombination |
GO_0031860 | Biological process | telomeric 3' overhang formation |
GO_0000019 | Biological process | regulation of mitotic recombination |
GO_0042138 | Biological process | meiotic DNA double-strand break formation |
GO_0097552 | Biological process | mitochondrial double-strand break repair via homologous recombination |
GO_0007004 | Biological process | telomere maintenance via telomerase |
GO_0030870 | Cellular component | Mre11 complex |
GO_0005657 | Cellular component | replication fork |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0016605 | Cellular component | PML body |
GO_0005737 | Cellular component | cytoplasm |
GO_0070533 | Cellular component | BRCA1-C complex |
GO_0000781 | Cellular component | chromosome, telomeric region |
GO_0035861 | Cellular component | site of double-strand break |
GO_0098687 | Cellular component | chromosomal region |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0003690 | Molecular function | double-stranded DNA binding |
GO_0008296 | Molecular function | 3'-5'-DNA exonuclease activity |
GO_0045296 | Molecular function | cadherin binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0008408 | Molecular function | 3'-5' exonuclease activity |
GO_0030145 | Molecular function | manganese ion binding |
GO_0003678 | Molecular function | DNA helicase activity |
GO_0004518 | Molecular function | nuclease activity |
GO_0004520 | Molecular function | DNA endonuclease activity |
GO_0000014 | Molecular function | single-stranded DNA endodeoxyribonuclease activity |
GO_0005515 | Molecular function | protein binding |
Gene name | MRE11 |
Protein name | MRE11 homolog, double strand break repair nuclease Double-strand break repair protein MRE11 (EC 3.1.-.-) (Double-strand break repair protein MRE11A) (Meiotic recombination 11 homolog 1) (MRE11 homolog 1) (Meiotic recombination 11 homolog A) (MRE11 homolog A) Double-strand break repair protein MRE11 meiotic recombination 11 homolog A (S. cerevisiae) (MRE11 meiotic recombination 11-like protein A isoform 1) (MRE11A protein) MRE11 meiotic recombination 11-like protein A isoform 2 Double-strand break repair protein MRE11 Alternative protein MRE11A |
Synonyms | MRE11A HNGS1 |
Description | FUNCTION: Component of the MRN complex, which plays a central role in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity and meiosis . The complex possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity, which are provided by MRE11 . RAD50 may be required to bind DNA ends and hold them in close proximity . This could facilitate searches for short or long regions of sequence homology in the recombining DNA templates, and may also stimulate the activity of DNA ligases and/or restrict the nuclease activity of MRE11 to prevent nucleolytic degradation past a given point . The complex may also be required for DNA damage signaling via activation of the ATM kinase . In telomeres the MRN complex may modulate t-loop formation . . FUNCTION: Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. . |
Accessions | F5H742 ENST00000323929.8 [P49959-1] F5GXT0 ENST00000407439.7 [P49959-3] F5H256 ENST00000538923.1 Q9BS79 ENST00000540013.5 ENST00000536754.5 ENST00000393241.8 A0A0S2Z438 L8E9C6 Q05D78 P49959 ENST00000323977.7 [P49959-2] F8W7U8 |