Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 19 studies | 29% ± 11% | |
astrocyte | 12 studies | 37% ± 18% | |
fibroblast | 12 studies | 23% ± 7% | |
oligodendrocyte | 10 studies | 33% ± 14% | |
epithelial cell | 9 studies | 38% ± 17% | |
adipocyte | 9 studies | 26% ± 7% | |
glutamatergic neuron | 8 studies | 49% ± 27% | |
macrophage | 8 studies | 31% ± 11% | |
microglial cell | 8 studies | 30% ± 11% | |
oligodendrocyte precursor cell | 8 studies | 38% ± 18% | |
type I pneumocyte | 8 studies | 24% ± 8% | |
retinal cone cell | 7 studies | 31% ± 8% | |
pericyte | 7 studies | 23% ± 6% | |
smooth muscle cell | 7 studies | 21% ± 4% | |
basal cell | 6 studies | 30% ± 16% | |
Mueller cell | 6 studies | 25% ± 5% | |
endothelial cell of lymphatic vessel | 6 studies | 27% ± 7% | |
GABAergic neuron | 6 studies | 50% ± 21% | |
neutrophil | 5 studies | 22% ± 5% | |
B cell | 5 studies | 19% ± 3% | |
neuron | 5 studies | 38% ± 14% | |
interneuron | 5 studies | 47% ± 22% | |
retinal ganglion cell | 5 studies | 28% ± 11% | |
myeloid cell | 5 studies | 22% ± 4% | |
amacrine cell | 5 studies | 33% ± 7% | |
retina horizontal cell | 5 studies | 28% ± 5% | |
dendritic cell | 5 studies | 24% ± 8% | |
lymphocyte | 5 studies | 21% ± 5% | |
granule cell | 4 studies | 24% ± 8% | |
club cell | 4 studies | 20% ± 5% | |
cardiac muscle cell | 4 studies | 21% ± 2% | |
ciliated cell | 4 studies | 29% ± 4% | |
monocyte | 4 studies | 21% ± 3% | |
plasmacytoid dendritic cell | 4 studies | 24% ± 7% | |
squamous epithelial cell | 3 studies | 47% ± 21% | |
naive B cell | 3 studies | 20% ± 4% | |
conventional dendritic cell | 3 studies | 27% ± 10% | |
glial cell | 3 studies | 25% ± 5% | |
retinal bipolar neuron | 3 studies | 25% ± 5% | |
retinal pigment epithelial cell | 3 studies | 37% ± 15% | |
mononuclear phagocyte | 3 studies | 22% ± 4% | |
GABAergic amacrine cell | 3 studies | 27% ± 10% | |
glycinergic amacrine cell | 3 studies | 26% ± 5% | |
retinal rod cell | 3 studies | 23% ± 4% | |
rod bipolar cell | 3 studies | 31% ± 6% | |
type II pneumocyte | 3 studies | 21% ± 5% | |
abnormal cell | 3 studies | 27% ± 9% | |
intestinal crypt stem cell | 3 studies | 18% ± 2% | |
myofibroblast cell | 3 studies | 24% ± 4% | |
alveolar macrophage | 3 studies | 23% ± 7% | |
goblet cell | 3 studies | 29% ± 13% | |
transit amplifying cell | 3 studies | 36% ± 26% | |
mast cell | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2065.67 | 1445 / 1445 | 100% | 11.87 | 183 / 183 |
brain | 100% | 1411.07 | 2640 / 2642 | 100% | 14.02 | 705 / 705 |
lung | 100% | 1720.04 | 578 / 578 | 100% | 13.18 | 1154 / 1155 |
breast | 100% | 1598.85 | 459 / 459 | 100% | 10.32 | 1117 / 1118 |
prostate | 100% | 1705.95 | 245 / 245 | 100% | 9.31 | 501 / 502 |
uterus | 100% | 1963.15 | 170 / 170 | 100% | 12.36 | 458 / 459 |
ovary | 100% | 1457.07 | 180 / 180 | 100% | 8.90 | 429 / 430 |
thymus | 100% | 1214.06 | 653 / 653 | 99% | 8.30 | 601 / 605 |
bladder | 100% | 1519.62 | 21 / 21 | 99% | 10.82 | 500 / 504 |
kidney | 100% | 1219.56 | 89 / 89 | 99% | 7.28 | 889 / 901 |
pancreas | 100% | 676.70 | 327 / 328 | 99% | 9.97 | 176 / 178 |
stomach | 100% | 1012.43 | 359 / 359 | 97% | 8.43 | 278 / 286 |
intestine | 100% | 1499.73 | 966 / 966 | 97% | 8.66 | 509 / 527 |
adrenal gland | 100% | 906.06 | 258 / 258 | 96% | 5.74 | 221 / 230 |
liver | 100% | 695.59 | 226 / 226 | 94% | 4.68 | 383 / 406 |
skin | 100% | 1500.03 | 1808 / 1809 | 89% | 6.49 | 421 / 472 |
adipose | 100% | 1584.42 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 6.94 | 29 / 29 |
spleen | 100% | 1558.83 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 9.87 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.07 | 1 / 1 |
blood vessel | 100% | 1352.84 | 1331 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 747.37 | 848 / 861 | 0% | 0 | 0 / 0 |
muscle | 98% | 613.77 | 788 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 1373.82 | 879 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 59% | 3.06 | 47 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051495 | Biological process | positive regulation of cytoskeleton organization |
GO_0031122 | Biological process | cytoplasmic microtubule organization |
GO_0005730 | Cellular component | nucleolus |
GO_0032154 | Cellular component | cleavage furrow |
GO_0097431 | Cellular component | mitotic spindle pole |
GO_0030496 | Cellular component | midbody |
GO_0005654 | Cellular component | nucleoplasm |
GO_0015630 | Cellular component | microtubule cytoskeleton |
GO_0008352 | Cellular component | katanin complex |
GO_0072686 | Cellular component | mitotic spindle |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0008017 | Molecular function | microtubule binding |
Gene name | KATNBL1 |
Protein name | KATNB1-like protein 1 (Katanin p80 subunit B-like 1) Katanin regulatory subunit B1 like 1 |
Synonyms | C15orf29 |
Description | FUNCTION: Regulates microtubule-severing activity of KATNAL1 in a concentration-dependent manner in vitro. . |
Accessions | H0YKW3 ENST00000559464.1 ENST00000561371.5 ENST00000559515.1 H0YMR8 H0YL62 H0YNF7 ENST00000559760.5 H0YNG2 Q9H079 ENST00000560108.5 ENST00000557877.5 ENST00000559462.1 H0YLX9 H0YNH1 ENST00000256544.8 H0YNW3 H0YLP4 ENST00000561270.5 ENST00000560310.5 |