Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 26 studies | 44% ± 17% | |
astrocyte | 19 studies | 40% ± 19% | |
microglial cell | 15 studies | 46% ± 14% | |
macrophage | 15 studies | 41% ± 18% | |
oligodendrocyte | 14 studies | 41% ± 17% | |
fibroblast | 14 studies | 38% ± 13% | |
oligodendrocyte precursor cell | 13 studies | 42% ± 19% | |
glutamatergic neuron | 12 studies | 51% ± 27% | |
GABAergic neuron | 11 studies | 48% ± 24% | |
B cell | 11 studies | 30% ± 11% | |
pericyte | 11 studies | 38% ± 12% | |
mast cell | 10 studies | 30% ± 11% | |
smooth muscle cell | 10 studies | 34% ± 12% | |
basal cell | 9 studies | 33% ± 22% | |
adipocyte | 9 studies | 54% ± 14% | |
endothelial cell of lymphatic vessel | 9 studies | 38% ± 15% | |
natural killer cell | 8 studies | 29% ± 11% | |
epithelial cell | 8 studies | 45% ± 20% | |
dendritic cell | 8 studies | 38% ± 16% | |
neuron | 7 studies | 41% ± 19% | |
myeloid cell | 7 studies | 33% ± 11% | |
CD4-positive, alpha-beta T cell | 6 studies | 28% ± 10% | |
interneuron | 6 studies | 57% ± 23% | |
CD8-positive, alpha-beta T cell | 6 studies | 30% ± 10% | |
ciliated cell | 6 studies | 30% ± 9% | |
monocyte | 6 studies | 39% ± 7% | |
T cell | 6 studies | 35% ± 10% | |
type II pneumocyte | 6 studies | 34% ± 11% | |
cardiac muscle cell | 5 studies | 38% ± 12% | |
regulatory T cell | 5 studies | 35% ± 13% | |
type I pneumocyte | 5 studies | 44% ± 10% | |
classical monocyte | 4 studies | 21% ± 5% | |
granule cell | 4 studies | 34% ± 14% | |
mesothelial cell | 4 studies | 35% ± 14% | |
lymphocyte | 4 studies | 42% ± 17% | |
retinal cone cell | 4 studies | 24% ± 5% | |
Mueller cell | 4 studies | 38% ± 12% | |
amacrine cell | 4 studies | 33% ± 10% | |
retina horizontal cell | 4 studies | 35% ± 10% | |
endothelial cell of vascular tree | 4 studies | 38% ± 17% | |
club cell | 4 studies | 37% ± 12% | |
goblet cell | 4 studies | 34% ± 27% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 30% ± 9% | |
CD16-positive, CD56-dim natural killer cell, human | 3 studies | 23% ± 10% | |
conventional dendritic cell | 3 studies | 36% ± 15% | |
effector memory CD8-positive, alpha-beta T cell | 3 studies | 32% ± 10% | |
hematopoietic precursor cell | 3 studies | 23% ± 5% | |
mature NK T cell | 3 studies | 25% ± 12% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 3 studies | 31% ± 10% | |
non-classical monocyte | 3 studies | 22% ± 3% | |
GABAergic interneuron | 3 studies | 46% ± 3% | |
glial cell | 3 studies | 29% ± 7% | |
plasma cell | 3 studies | 33% ± 7% | |
endothelial cell of artery | 3 studies | 20% ± 5% | |
mononuclear phagocyte | 3 studies | 31% ± 10% | |
vein endothelial cell | 3 studies | 39% ± 19% | |
retinal bipolar neuron | 3 studies | 28% ± 6% | |
GABAergic amacrine cell | 3 studies | 34% ± 12% | |
ON-bipolar cell | 3 studies | 27% ± 11% | |
glycinergic amacrine cell | 3 studies | 27% ± 4% | |
retinal ganglion cell | 3 studies | 43% ± 14% | |
retinal rod cell | 3 studies | 25% ± 1% | |
rod bipolar cell | 3 studies | 40% ± 18% | |
Schwann cell | 3 studies | 35% ± 15% | |
chondrocyte | 3 studies | 36% ± 8% | |
hepatocyte | 3 studies | 60% ± 19% | |
ependymal cell | 3 studies | 48% ± 20% | |
alveolar macrophage | 3 studies | 48% ± 11% | |
capillary endothelial cell | 3 studies | 33% ± 5% | |
respiratory goblet cell | 3 studies | 42% ± 14% | |
leukocyte | 3 studies | 55% ± 7% | |
mural cell | 3 studies | 51% ± 13% | |
mucus secreting cell | 3 studies | 34% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 16 studies | 47% ± 21% | |
lung | 6 studies | 33% ± 10% | |
eye | 5 studies | 37% ± 19% | |
heart | 4 studies | 37% ± 8% | |
liver | 4 studies | 32% ± 18% | |
peripheral blood | 3 studies | 24% ± 6% | |
intestine | 3 studies | 19% ± 2% | |
adipose | 3 studies | 51% ± 19% | |
kidney | 3 studies | 28% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2934.37 | 1445 / 1445 | 100% | 10.89 | 183 / 183 |
lung | 100% | 3373.08 | 578 / 578 | 100% | 8.90 | 1154 / 1155 |
brain | 100% | 2476.33 | 2638 / 2642 | 100% | 7.12 | 705 / 705 |
breast | 100% | 3116.41 | 459 / 459 | 100% | 11.52 | 1116 / 1118 |
prostate | 100% | 2880.20 | 245 / 245 | 100% | 8.53 | 500 / 502 |
thymus | 100% | 3008.69 | 653 / 653 | 99% | 8.41 | 601 / 605 |
ovary | 100% | 3335.74 | 180 / 180 | 99% | 6.63 | 427 / 430 |
bladder | 100% | 3185.38 | 21 / 21 | 99% | 9.43 | 500 / 504 |
adrenal gland | 100% | 4325.85 | 258 / 258 | 99% | 7.18 | 227 / 230 |
pancreas | 100% | 1466.72 | 327 / 328 | 99% | 9.66 | 176 / 178 |
uterus | 100% | 3440.65 | 170 / 170 | 98% | 9.35 | 452 / 459 |
intestine | 100% | 3271.79 | 966 / 966 | 97% | 8.35 | 513 / 527 |
stomach | 100% | 2127.86 | 359 / 359 | 97% | 8.20 | 278 / 286 |
kidney | 100% | 2421.53 | 89 / 89 | 96% | 6.80 | 868 / 901 |
liver | 100% | 2144.13 | 226 / 226 | 95% | 5.49 | 384 / 406 |
skin | 100% | 4710.17 | 1808 / 1809 | 93% | 7.64 | 440 / 472 |
adipose | 100% | 3246.16 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 9.04 | 29 / 29 |
spleen | 100% | 4454.41 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 7.69 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.66 | 1 / 1 |
blood vessel | 100% | 3011.60 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1674.45 | 800 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 2004.97 | 849 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 89% | 2100.47 | 830 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 74% | 4.22 | 59 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016567 | Biological process | protein ubiquitination |
GO_0006511 | Biological process | ubiquitin-dependent protein catabolic process |
GO_0045879 | Biological process | negative regulation of smoothened signaling pathway |
GO_0007283 | Biological process | spermatogenesis |
GO_0030154 | Biological process | cell differentiation |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0001650 | Cellular component | fibrillar center |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
Gene name | HERC4 |
Protein name | Probable E3 ubiquitin-protein ligase HERC4 (EC 2.3.2.26) (HECT domain and RCC1-like domain-containing protein 4) (HECT-type E3 ubiquitin transferase HERC4) HECT and RLD domain containing E3 ubiquitin protein ligase 4 |
Synonyms | KIAA1593 |
Description | FUNCTION: Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates. . |
Accessions | ENST00000395198.7 [Q5GLZ8-1] ENST00000427635.6 D6RFK9 ENST00000373700.9 [Q5GLZ8-2] ENST00000513996.5 ENST00000506515.1 Q5GLZ8 ENST00000277817.10 [Q5GLZ8-6] ENST00000412272.6 [Q5GLZ8-3] H0Y6K7 ENST00000492996.6 [Q5GLZ8-4] D6RCL5 ENST00000473533.6 [Q5GLZ8-5] |