Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 26% ± 9% | |
natural killer cell | 13 studies | 23% ± 6% | |
epithelial cell | 8 studies | 34% ± 17% | |
macrophage | 8 studies | 27% ± 9% | |
T cell | 7 studies | 20% ± 4% | |
CD16-negative, CD56-bright natural killer cell, human | 7 studies | 20% ± 4% | |
CD16-positive, CD56-dim natural killer cell, human | 7 studies | 24% ± 4% | |
microglial cell | 7 studies | 25% ± 8% | |
fibroblast | 7 studies | 20% ± 3% | |
astrocyte | 7 studies | 26% ± 10% | |
myeloid cell | 6 studies | 26% ± 11% | |
dendritic cell | 6 studies | 22% ± 10% | |
ciliated cell | 6 studies | 24% ± 8% | |
pericyte | 6 studies | 23% ± 8% | |
type II pneumocyte | 6 studies | 19% ± 5% | |
CD4-positive, alpha-beta T cell | 5 studies | 18% ± 2% | |
CD8-positive, alpha-beta T cell | 5 studies | 20% ± 3% | |
endothelial cell of lymphatic vessel | 5 studies | 28% ± 9% | |
type I pneumocyte | 5 studies | 20% ± 4% | |
monocyte | 5 studies | 25% ± 6% | |
club cell | 5 studies | 20% ± 5% | |
smooth muscle cell | 5 studies | 19% ± 4% | |
basal cell | 5 studies | 27% ± 14% | |
leukocyte | 4 studies | 20% ± 4% | |
non-classical monocyte | 4 studies | 23% ± 8% | |
effector memory CD8-positive, alpha-beta T cell | 4 studies | 22% ± 2% | |
adipocyte | 4 studies | 21% ± 4% | |
mast cell | 4 studies | 18% ± 4% | |
lymphocyte | 4 studies | 35% ± 9% | |
classical monocyte | 3 studies | 26% ± 6% | |
mature NK T cell | 3 studies | 26% ± 7% | |
B cell | 3 studies | 17% ± 1% | |
GABAergic neuron | 3 studies | 36% ± 6% | |
glutamatergic neuron | 3 studies | 32% ± 11% | |
alveolar macrophage | 3 studies | 32% ± 8% | |
CD8-positive, alpha-beta memory T cell | 3 studies | 21% ± 3% | |
goblet cell | 3 studies | 35% ± 21% | |
transit amplifying cell | 3 studies | 35% ± 22% | |
erythroblast | 3 studies | 19% ± 3% | |
oligodendrocyte | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 3922.29 | 21 / 21 | 100% | 46.10 | 504 / 504 |
esophagus | 100% | 4047.41 | 1445 / 1445 | 100% | 56.27 | 183 / 183 |
intestine | 100% | 4338.38 | 966 / 966 | 100% | 54.71 | 527 / 527 |
pancreas | 100% | 2905.23 | 328 / 328 | 100% | 41.04 | 178 / 178 |
skin | 100% | 7352.82 | 1809 / 1809 | 100% | 81.04 | 472 / 472 |
uterus | 100% | 4006.14 | 170 / 170 | 100% | 47.99 | 459 / 459 |
breast | 100% | 4651.26 | 459 / 459 | 100% | 46.34 | 1116 / 1118 |
brain | 100% | 2879.61 | 2636 / 2642 | 100% | 41.94 | 705 / 705 |
ovary | 100% | 3226.17 | 180 / 180 | 100% | 50.53 | 429 / 430 |
kidney | 100% | 4304.04 | 89 / 89 | 100% | 33.49 | 898 / 901 |
stomach | 100% | 3281.59 | 359 / 359 | 100% | 51.94 | 285 / 286 |
prostate | 100% | 3698.64 | 245 / 245 | 100% | 29.78 | 500 / 502 |
thymus | 100% | 4530.81 | 652 / 653 | 100% | 43.35 | 603 / 605 |
lung | 100% | 6414.25 | 578 / 578 | 99% | 45.36 | 1147 / 1155 |
adrenal gland | 100% | 4272.41 | 258 / 258 | 98% | 33.32 | 226 / 230 |
liver | 100% | 3077.78 | 226 / 226 | 98% | 22.93 | 398 / 406 |
adipose | 100% | 4786.10 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 71.59 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 45.77 | 29 / 29 |
spleen | 100% | 6298.26 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 44.36 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 35.20 | 1 / 1 |
blood vessel | 100% | 4526.47 | 1334 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 6684.42 | 925 / 929 | 0% | 0 | 0 / 0 |
muscle | 99% | 2639.36 | 795 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 2363.88 | 844 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006338 | Biological process | chromatin remodeling |
GO_0042659 | Biological process | regulation of cell fate specification |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_2000736 | Biological process | regulation of stem cell differentiation |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0016607 | Cellular component | nuclear speck |
GO_0016581 | Cellular component | NuRD complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0005515 | Molecular function | protein binding |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | GATAD2A |
Protein name | GATA zinc finger domain containing 2A Alternative protein GATAD2A Transcriptional repressor p66-alpha (Hp66alpha) (GATA zinc finger domain-containing protein 2A) |
Synonyms | |
Description | FUNCTION: Transcriptional repressor . Acts as a component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin . Enhances MBD2-mediated repression . Efficient repression requires the presence of GATAD2B . . |
Accessions | C9JJK9 ENST00000494516.6 ENST00000444839.1 V9GYX5 ENST00000609040.5 ENST00000418032.3 ENST00000404158.5 [Q86YP4-3] ENST00000432704.5 V9GY85 L8ECH2 C9JVY3 ENST00000417582.6 ENST00000358713.7 [Q86YP4-1] ENST00000360315.7 [Q86YP4-1] Q86YP4 H7C3H1 C9JMI3 ENST00000429242.7 ENST00000683918.1 [Q86YP4-3] C9JGN4 |