Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 37 studies | 43% ± 23% | |
fibroblast | 35 studies | 44% ± 26% | |
macrophage | 24 studies | 39% ± 23% | |
astrocyte | 19 studies | 42% ± 19% | |
plasma cell | 17 studies | 41% ± 23% | |
pericyte | 17 studies | 46% ± 24% | |
smooth muscle cell | 16 studies | 42% ± 21% | |
microglial cell | 15 studies | 44% ± 17% | |
oligodendrocyte precursor cell | 12 studies | 39% ± 17% | |
epithelial cell | 11 studies | 44% ± 24% | |
myeloid cell | 11 studies | 40% ± 17% | |
adipocyte | 11 studies | 76% ± 16% | |
monocyte | 10 studies | 48% ± 25% | |
natural killer cell | 10 studies | 29% ± 16% | |
classical monocyte | 10 studies | 28% ± 8% | |
endothelial cell of artery | 10 studies | 34% ± 18% | |
mesothelial cell | 10 studies | 48% ± 19% | |
endothelial cell of lymphatic vessel | 9 studies | 51% ± 21% | |
type I pneumocyte | 9 studies | 51% ± 23% | |
CD16-positive, CD56-dim natural killer cell, human | 9 studies | 25% ± 15% | |
basal cell | 9 studies | 43% ± 25% | |
ciliated cell | 9 studies | 37% ± 19% | |
alveolar macrophage | 8 studies | 45% ± 31% | |
vein endothelial cell | 8 studies | 44% ± 26% | |
neutrophil | 7 studies | 33% ± 20% | |
myofibroblast cell | 7 studies | 35% ± 23% | |
club cell | 7 studies | 47% ± 22% | |
capillary endothelial cell | 7 studies | 26% ± 11% | |
mast cell | 7 studies | 29% ± 14% | |
endothelial cell of vascular tree | 7 studies | 36% ± 22% | |
connective tissue cell | 7 studies | 37% ± 21% | |
cardiac muscle cell | 6 studies | 60% ± 24% | |
dendritic cell | 6 studies | 31% ± 9% | |
type II pneumocyte | 6 studies | 58% ± 15% | |
glutamatergic neuron | 6 studies | 37% ± 19% | |
hepatocyte | 5 studies | 69% ± 18% | |
GABAergic neuron | 5 studies | 36% ± 12% | |
podocyte | 5 studies | 51% ± 29% | |
IgG plasma cell | 5 studies | 27% ± 12% | |
respiratory goblet cell | 5 studies | 48% ± 23% | |
T cell | 5 studies | 31% ± 16% | |
non-classical monocyte | 4 studies | 22% ± 9% | |
cholangiocyte | 4 studies | 67% ± 17% | |
interneuron | 4 studies | 33% ± 18% | |
lymphocyte | 4 studies | 38% ± 15% | |
Mueller cell | 4 studies | 34% ± 10% | |
retinal rod cell | 4 studies | 22% ± 4% | |
abnormal cell | 4 studies | 41% ± 28% | |
muscle cell | 4 studies | 45% ± 19% | |
goblet cell | 4 studies | 39% ± 33% | |
neuron | 4 studies | 43% ± 25% | |
plasmablast | 4 studies | 38% ± 22% | |
IgA plasma cell | 4 studies | 33% ± 19% | |
squamous epithelial cell | 3 studies | 34% ± 21% | |
pancreatic A cell | 3 studies | 28% ± 9% | |
type B pancreatic cell | 3 studies | 34% ± 16% | |
endothelial cell of sinusoid | 3 studies | 49% ± 8% | |
hepatic stellate cell | 3 studies | 72% ± 16% | |
granule cell | 3 studies | 29% ± 14% | |
progenitor cell | 3 studies | 28% ± 6% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 30% ± 11% | |
endocardial cell | 3 studies | 47% ± 15% | |
secretory cell | 3 studies | 28% ± 8% | |
retinal pigment epithelial cell | 3 studies | 50% ± 17% | |
ependymal cell | 3 studies | 51% ± 12% | |
adventitial cell | 3 studies | 45% ± 22% | |
chondrocyte | 3 studies | 54% ± 28% | |
oligodendrocyte | 3 studies | 32% ± 14% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 60% ± 25% | |
kidney loop of Henle epithelial cell | 3 studies | 43% ± 18% | |
mural cell | 3 studies | 50% ± 4% | |
mucus secreting cell | 3 studies | 58% ± 12% | |
myoepithelial cell | 3 studies | 52% ± 26% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 15 studies | 28% ± 14% | |
lung | 9 studies | 43% ± 19% | |
heart | 6 studies | 50% ± 21% | |
eye | 4 studies | 33% ± 21% | |
adipose | 4 studies | 51% ± 30% | |
pancreas | 3 studies | 35% ± 15% | |
liver | 3 studies | 59% ± 22% | |
intestine | 3 studies | 20% ± 4% | |
kidney | 3 studies | 53% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 7173.57 | 578 / 578 | 100% | 39.05 | 1152 / 1155 |
ovary | 100% | 5867.23 | 180 / 180 | 100% | 23.44 | 428 / 430 |
uterus | 100% | 4984.69 | 170 / 170 | 98% | 27.63 | 452 / 459 |
pancreas | 100% | 3932.45 | 328 / 328 | 98% | 32.40 | 175 / 178 |
stomach | 100% | 3715.52 | 359 / 359 | 98% | 31.03 | 281 / 286 |
kidney | 100% | 3578.62 | 89 / 89 | 98% | 36.02 | 883 / 901 |
breast | 100% | 6362.05 | 459 / 459 | 98% | 28.30 | 1095 / 1118 |
bladder | 100% | 4773.90 | 21 / 21 | 98% | 27.36 | 493 / 504 |
intestine | 100% | 3714.75 | 965 / 966 | 98% | 24.57 | 514 / 527 |
esophagus | 93% | 2887.79 | 1344 / 1445 | 99% | 46.13 | 182 / 183 |
thymus | 100% | 5720.52 | 653 / 653 | 91% | 27.68 | 550 / 605 |
prostate | 100% | 3548.90 | 244 / 245 | 91% | 15.18 | 455 / 502 |
liver | 100% | 4383.54 | 225 / 226 | 90% | 18.50 | 367 / 406 |
skin | 98% | 5207.97 | 1781 / 1809 | 90% | 21.36 | 426 / 472 |
adrenal gland | 100% | 6323.63 | 258 / 258 | 77% | 10.58 | 177 / 230 |
adipose | 100% | 7556.82 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 7208.16 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3264.73 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.09 | 1 / 1 |
muscle | 99% | 4001.15 | 796 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 3678.14 | 841 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 27.47 | 43 / 45 |
peripheral blood | 94% | 3066.91 | 872 / 929 | 0% | 0 | 0 / 0 |
brain | 12% | 150.47 | 327 / 2642 | 46% | 6.17 | 323 / 705 |
eye | 0% | 0 | 0 / 0 | 41% | 4.02 | 33 / 80 |
lymph node | 0% | 0 | 0 / 0 | 38% | 5.26 | 11 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016020 | Cellular component | membrane |
GO_0003723 | Molecular function | RNA binding |
Gene name | FNDC3B |
Protein name | Fibronectin type III domain containing 3B Fibronectin type III domain-containing protein 3B (Factor for adipocyte differentiation 104) (HCV NS5A-binding protein 37) |
Synonyms | UNQ2421/PRO4979/PRO34274 FAD104 NS5ABP37 |
Description | FUNCTION: May be a positive regulator of adipogenesis. . |
Accessions | ENST00000415807.7 [Q53EP0-1] ENST00000416957.5 [Q53EP0-1] ENST00000336824.8 [Q53EP0-1] ENST00000421757.5 [Q53EP0-3] ENST00000443501.1 Q53EP0 C9JKH7 ENST00000423424.5 [Q53EP0-3] |