Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 18 studies | 24% ± 6% | |
lung | 16 studies | 36% ± 13% | |
intestine | 9 studies | 46% ± 17% | |
kidney | 8 studies | 32% ± 10% | |
liver | 6 studies | 27% ± 8% | |
uterus | 4 studies | 42% ± 3% | |
breast | 4 studies | 35% ± 7% | |
bone marrow | 3 studies | 26% ± 10% | |
adipose | 3 studies | 32% ± 9% | |
prostate | 3 studies | 19% ± 4% | |
placenta | 3 studies | 25% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 7098.70 | 359 / 359 | 100% | 175.99 | 285 / 286 |
liver | 100% | 13280.96 | 226 / 226 | 100% | 172.13 | 404 / 406 |
thymus | 100% | 9071.09 | 651 / 653 | 100% | 116.44 | 603 / 605 |
kidney | 100% | 10398.63 | 89 / 89 | 99% | 154.74 | 894 / 901 |
intestine | 100% | 13276.77 | 966 / 966 | 98% | 175.17 | 518 / 527 |
lung | 100% | 14490.46 | 578 / 578 | 98% | 112.58 | 1135 / 1155 |
ovary | 100% | 13980.96 | 180 / 180 | 97% | 90.64 | 419 / 430 |
prostate | 100% | 8680.18 | 244 / 245 | 97% | 69.80 | 489 / 502 |
breast | 100% | 15380.15 | 459 / 459 | 97% | 123.49 | 1081 / 1118 |
pancreas | 96% | 3659.43 | 316 / 328 | 99% | 123.62 | 176 / 178 |
bladder | 100% | 9115.57 | 21 / 21 | 92% | 115.78 | 463 / 504 |
uterus | 100% | 12972.94 | 170 / 170 | 92% | 93.38 | 421 / 459 |
skin | 90% | 6225.80 | 1629 / 1809 | 95% | 115.77 | 450 / 472 |
adrenal gland | 100% | 8912.18 | 258 / 258 | 83% | 63.23 | 192 / 230 |
esophagus | 96% | 6388.36 | 1389 / 1445 | 85% | 64.89 | 156 / 183 |
brain | 43% | 1195.22 | 1147 / 2642 | 99% | 112.65 | 699 / 705 |
adipose | 100% | 18660.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 152.63 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 109.06 | 29 / 29 |
spleen | 100% | 24679.46 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 7527.88 | 1324 / 1335 | 0% | 0 | 0 / 0 |
heart | 94% | 4847.02 | 813 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 59.57 | 42 / 45 |
peripheral blood | 81% | 16722.99 | 750 / 929 | 0% | 0 | 0 / 0 |
muscle | 74% | 2226.28 | 593 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0002416 | Biological process | IgG immunoglobulin transcytosis in epithelial cells mediated by FcRn immunoglobulin receptor |
GO_0006955 | Biological process | immune response |
GO_0005615 | Cellular component | extracellular space |
GO_0010008 | Cellular component | endosome membrane |
GO_0009897 | Cellular component | external side of plasma membrane |
GO_0019864 | Molecular function | IgG binding |
GO_0005515 | Molecular function | protein binding |
GO_0030881 | Molecular function | beta-2-microglobulin binding |
GO_0042605 | Molecular function | peptide antigen binding |
Gene name | FCGRT |
Protein name | IgG receptor FcRn large subunit p51 (IgG Fc fragment receptor transporter alpha chain) (Neonatal Fc receptor) IgG receptor FcRn large subunit p51 (FcRn) (IgG Fc fragment receptor transporter alpha chain) (Neonatal Fc receptor) Fc gamma receptor and transporter |
Synonyms | FCRN |
Description | FUNCTION: Cell surface receptor that transfers passive humoral immunity from the mother to the newborn. Binds to the Fc region of monomeric immunoglobulin gamma and mediates its selective uptake from milk . IgG in the milk is bound at the apical surface of the intestinal epithelium. The resultant FcRn-IgG complexes are transcytosed across the intestinal epithelium and IgG is released from FcRn into blood or tissue fluids. Throughout life, contributes to effective humoral immunity by recycling IgG and extending its half-life in the circulation. Mechanistically, monomeric IgG binding to FcRn in acidic endosomes of endothelial and hematopoietic cells recycles IgG to the cell surface where it is released into the circulation . In addition of IgG, regulates homeostasis of the other most abundant circulating protein albumin/ALB . .; FUNCTION: (Microbial infection) Acts as an uncoating receptor for a panel of echoviruses including Echovirus 5, 6, 7, 9, 11, 13, 25 and 29. . |
Accessions | ENST00000426395.7 M0QYN1 ENST00000598076.1 ENST00000598927.5 ENST00000599701.5 M0R0A9 M0R220 ENST00000593381.5 M0QYN9 ENST00000221466.10 ENST00000599988.5 ENST00000598491.5 ENST00000596975.5 M0QYM4 M0R0K7 M0R266 ENST00000598319.5 M0R0H0 ENST00000600273.5 P55899 M0R2T3 |