CNST report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	18 studies	29% ± 12%	Explore
regulatory T cell	17 studies	24% ± 6%	Explore
mast cell	14 studies	29% ± 6%	Explore
CD4-positive, alpha-beta T cell	14 studies	18% ± 3%	Explore
B cell	12 studies	20% ± 4%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	9 studies	21% ± 7%	Explore
glutamatergic neuron	9 studies	38% ± 22%	Explore
endothelial cell of lymphatic vessel	8 studies	35% ± 15%	Explore
naive B cell	8 studies	21% ± 4%	Explore
platelet	8 studies	25% ± 6%	Explore
memory B cell	7 studies	17% ± 1%	Explore
adipocyte	7 studies	27% ± 11%	Explore
T cell	6 studies	20% ± 3%	Explore
hematopoietic stem cell	6 studies	30% ± 9%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	21% ± 5%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	5 studies	21% ± 4%	Explore
neuron	5 studies	25% ± 7%	Explore
epithelial cell	5 studies	29% ± 11%	Explore
fibroblast	5 studies	21% ± 4%	Explore
T follicular helper cell	5 studies	18% ± 3%	Explore
macrophage	5 studies	22% ± 4%	Explore
mucosal invariant T cell	4 studies	17% ± 1%	Explore
ciliated cell	4 studies	26% ± 10%	Explore
lymphocyte	4 studies	25% ± 5%	Explore
GABAergic neuron	4 studies	47% ± 16%	Explore
astrocyte	4 studies	27% ± 7%	Explore
oligodendrocyte precursor cell	4 studies	29% ± 8%	Explore
type I pneumocyte	4 studies	25% ± 7%	Explore
interneuron	4 studies	40% ± 18%	Explore
oligodendrocyte	4 studies	24% ± 4%	Explore
hematopoietic precursor cell	3 studies	36% ± 9%	Explore
glomerular endothelial cell	3 studies	23% ± 4%	Explore
microglial cell	3 studies	20% ± 3%	Explore
retinal ganglion cell	3 studies	45% ± 21%	Explore
amacrine cell	3 studies	21% ± 5%	Explore
endothelial cell of vascular tree	3 studies	30% ± 11%	Explore
vein endothelial cell	3 studies	35% ± 23%	Explore
hepatocyte	3 studies	37% ± 14%	Explore
effector memory CD4-positive, alpha-beta T cell	3 studies	20% ± 2%	Explore
megakaryocyte	3 studies	67% ± 19%	Explore
alveolar macrophage	3 studies	22% ± 6%	Explore
monocyte	3 studies	19% ± 4%	Explore
pericyte	3 studies	18% ± 2%	Explore
smooth muscle cell	3 studies	19% ± 2%	Explore
CD8-positive, alpha-beta T cell	3 studies	17% ± 2%	Explore
gamma-delta T cell	3 studies	19% ± 2%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	8 studies	34% ± 16%	Explore
peripheral blood	4 studies	19% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	3373.17	1445 / 1445	100%	22.16	183 / 183
lung	100%	2386.33	578 / 578	100%	20.00	1153 / 1155
prostate	100%	1957.53	245 / 245	100%	19.26	501 / 502
breast	100%	2533.78	459 / 459	100%	29.29	1114 / 1118
thymus	100%	2606.92	653 / 653	99%	18.44	601 / 605
intestine	100%	3019.26	966 / 966	99%	13.78	520 / 527
stomach	100%	1481.92	359 / 359	98%	14.04	280 / 286
liver	100%	1608.13	225 / 226	98%	15.90	399 / 406
adrenal gland	100%	3889.69	258 / 258	98%	22.32	225 / 230
bladder	100%	2798.24	21 / 21	98%	13.18	493 / 504
uterus	100%	1984.19	170 / 170	98%	14.23	448 / 459
brain	97%	2345.82	2570 / 2642	100%	17.50	705 / 705
ovary	100%	1815.78	180 / 180	97%	12.76	418 / 430
skin	100%	2257.58	1807 / 1809	96%	29.71	455 / 472
kidney	100%	1258.66	89 / 89	94%	14.08	850 / 901
pancreas	93%	842.64	305 / 328	99%	14.53	176 / 178
adipose	100%	2862.44	1204 / 1204	0%	0	0 / 0
blood vessel	100%	2866.05	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	16.65	29 / 29
muscle	100%	4541.60	803 / 803	0%	0	0 / 0
spleen	100%	1860.07	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	15.52	45 / 45
ureter	0%	0	0 / 0	100%	11.66	1 / 1
heart	98%	1384.42	842 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	74%	7.06	59 / 80
peripheral blood	73%	975.16	677 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0