CFAP97 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	13 studies	23% ± 7%	Explore
ciliated cell	13 studies	25% ± 10%	Explore
endothelial cell of lymphatic vessel	10 studies	25% ± 8%	Explore
fibroblast	10 studies	24% ± 9%	Explore
CD4-positive, alpha-beta T cell	10 studies	21% ± 6%	Explore
natural killer cell	9 studies	19% ± 3%	Explore
pericyte	9 studies	18% ± 3%	Explore
smooth muscle cell	8 studies	19% ± 2%	Explore
mucosal invariant T cell	8 studies	18% ± 2%	Explore
B cell	7 studies	19% ± 3%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	6 studies	19% ± 1%	Explore
CD16-positive, CD56-dim natural killer cell, human	6 studies	17% ± 2%	Explore
gamma-delta T cell	6 studies	21% ± 7%	Explore
memory B cell	6 studies	18% ± 3%	Explore
naive B cell	5 studies	19% ± 3%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	5 studies	19% ± 3%	Explore
CD16-negative, CD56-bright natural killer cell, human	5 studies	18% ± 2%	Explore
CD8-positive, alpha-beta T cell	5 studies	19% ± 3%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	19% ± 3%	Explore
epithelial cell	5 studies	33% ± 16%	Explore
basal cell	5 studies	23% ± 8%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	21% ± 3%	Explore
mast cell	4 studies	21% ± 2%	Explore
type I pneumocyte	4 studies	22% ± 3%	Explore
astrocyte	4 studies	23% ± 5%	Explore
GABAergic neuron	4 studies	27% ± 6%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	21% ± 6%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	19% ± 1%	Explore
oligodendrocyte	4 studies	18% ± 1%	Explore
T cell	3 studies	18% ± 2%	Explore
mature NK T cell	3 studies	17% ± 1%	Explore
retinal cone cell	3 studies	29% ± 2%	Explore
retinal rod cell	3 studies	20% ± 3%	Explore
endothelial cell of vascular tree	3 studies	17% ± 2%	Explore
glutamatergic neuron	3 studies	29% ± 7%	Explore
oligodendrocyte precursor cell	3 studies	23% ± 5%	Explore
abnormal cell	3 studies	19% ± 1%	Explore
myofibroblast cell	3 studies	20% ± 3%	Explore
T follicular helper cell	3 studies	17% ± 1%	Explore
connective tissue cell	3 studies	23% ± 6%	Explore
macrophage	3 studies	18% ± 3%	Explore
plasmacytoid dendritic cell	3 studies	27% ± 6%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	20% ± 2%	Explore
double negative thymocyte	3 studies	21% ± 5%	Explore
interneuron	3 studies	30% ± 15%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
eye	4 studies	23% ± 4%	Explore
brain	4 studies	25% ± 4%	Explore
peripheral blood	3 studies	22% ± 5%	Explore
lung	3 studies	24% ± 11%	Explore
uterus	3 studies	23% ± 8%	Explore
liver	3 studies	19% ± 2%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	2284.94	245 / 245	100%	28.29	501 / 502
esophagus	100%	2343.56	1445 / 1445	99%	24.78	182 / 183
breast	100%	3023.74	459 / 459	99%	31.05	1109 / 1118
brain	99%	1278.21	2616 / 2642	100%	27.14	705 / 705
lung	99%	2152.90	575 / 578	99%	20.85	1148 / 1155
thymus	100%	2806.15	653 / 653	98%	28.94	594 / 605
kidney	100%	1820.90	89 / 89	97%	24.46	875 / 901
stomach	100%	1611.89	359 / 359	97%	19.17	276 / 286
pancreas	98%	1235.14	322 / 328	98%	17.62	174 / 178
intestine	100%	2226.21	964 / 966	96%	20.28	505 / 527
ovary	100%	2745.08	180 / 180	96%	13.45	411 / 430
uterus	100%	2767.65	170 / 170	95%	15.89	434 / 459
skin	100%	2791.76	1806 / 1809	94%	29.63	446 / 472
bladder	100%	2842.48	21 / 21	94%	16.37	473 / 504
adrenal gland	100%	1792.60	258 / 258	91%	12.47	209 / 230
liver	100%	1551.73	226 / 226	78%	10.20	317 / 406
blood vessel	100%	4324.36	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	16.29	29 / 29
spleen	100%	1835.44	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	5.14	1 / 1
adipose	100%	3170.62	1203 / 1204	0%	0	0 / 0
tonsil	0%	0	0 / 0	96%	18.49	43 / 45
muscle	93%	921.75	750 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	93%	21.77	74 / 80
heart	92%	1062.67	792 / 861	0%	0	0 / 0
peripheral blood	36%	1238.24	337 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0