Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2971.13 | 1445 / 1445 | 100% | 34.58 | 183 / 183 |
lung | 100% | 3245.70 | 578 / 578 | 100% | 21.96 | 1155 / 1155 |
breast | 100% | 3460.14 | 459 / 459 | 100% | 33.43 | 1115 / 1118 |
bladder | 100% | 3264.43 | 21 / 21 | 100% | 18.12 | 502 / 504 |
intestine | 100% | 3055.97 | 966 / 966 | 99% | 23.58 | 524 / 527 |
stomach | 100% | 2241.82 | 359 / 359 | 99% | 27.34 | 284 / 286 |
uterus | 100% | 3446.15 | 170 / 170 | 99% | 16.55 | 454 / 459 |
prostate | 100% | 3210.71 | 245 / 245 | 99% | 17.75 | 495 / 502 |
skin | 100% | 4336.56 | 1809 / 1809 | 98% | 20.60 | 463 / 472 |
pancreas | 100% | 1504.48 | 327 / 328 | 98% | 15.13 | 175 / 178 |
thymus | 100% | 3573.26 | 653 / 653 | 98% | 13.87 | 591 / 605 |
ovary | 100% | 3561.38 | 180 / 180 | 97% | 11.72 | 416 / 430 |
kidney | 100% | 2127.58 | 89 / 89 | 94% | 13.22 | 851 / 901 |
brain | 96% | 1336.08 | 2528 / 2642 | 97% | 11.40 | 687 / 705 |
liver | 100% | 1942.96 | 226 / 226 | 87% | 9.42 | 355 / 406 |
adrenal gland | 100% | 2860.28 | 258 / 258 | 86% | 7.49 | 198 / 230 |
adipose | 100% | 3315.00 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2939.29 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 19.47 | 29 / 29 |
spleen | 100% | 3404.90 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.39 | 1 / 1 |
peripheral blood | 99% | 3359.86 | 923 / 929 | 0% | 0 | 0 / 0 |
muscle | 99% | 1415.16 | 797 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 18.19 | 44 / 45 |
heart | 97% | 1590.08 | 831 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 12.08 | 77 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0006397 | Biological process | mRNA processing |
GO_0032968 | Biological process | positive regulation of transcription elongation by RNA polymerase II |
GO_0008380 | Biological process | RNA splicing |
GO_0043405 | Biological process | regulation of MAP kinase activity |
GO_2000737 | Biological process | negative regulation of stem cell differentiation |
GO_0006468 | Biological process | protein phosphorylation |
GO_0046777 | Biological process | protein autophosphorylation |
GO_0051726 | Biological process | regulation of cell cycle |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0002944 | Cellular component | cyclin K-CDK12 complex |
GO_0008024 | Cellular component | cyclin/CDK positive transcription elongation factor complex |
GO_0019908 | Cellular component | nuclear cyclin-dependent protein kinase holoenzyme complex |
GO_0016607 | Cellular component | nuclear speck |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0106310 | Molecular function | protein serine kinase activity |
GO_0019901 | Molecular function | protein kinase binding |
GO_0004672 | Molecular function | protein kinase activity |
GO_0008353 | Molecular function | RNA polymerase II CTD heptapeptide repeat kinase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0005515 | Molecular function | protein binding |
GO_0004693 | Molecular function | cyclin-dependent protein serine/threonine kinase activity |
GO_0030332 | Molecular function | cyclin binding |
Gene name | CDK12 |
Protein name | Cyclin dependent kinase 12 Cyclin-dependent kinase 12 (EC 2.7.11.22) (EC 2.7.11.23) (Cdc2-related kinase, arginine/serine-rich) (CrkRS) (Cell division cycle 2-related protein kinase 7) (CDC2-related protein kinase 7) (Cell division protein kinase 12) (hCDK12) Cyclin-dependent kinase 12 Cyclin-dependent kinase 12 (EC 2.7.11.22) (EC 2.7.11.23) (Cell division protein kinase 12) |
Synonyms | CRKRS CRK7 KIAA0904 |
Description | FUNCTION: Cyclin-dependent kinase that phosphorylates the C-terminal domain (CTD) of the large subunit of RNA polymerase II (POLR2A), thereby acting as a key regulator of transcription elongation. Regulates the expression of genes involved in DNA repair and is required for the maintenance of genomic stability. Preferentially phosphorylates 'Ser-5' in CTD repeats that are already phosphorylated at 'Ser-7', but can also phosphorylate 'Ser-2'. Required for RNA splicing, possibly by phosphorylating SRSF1/SF2. Involved in regulation of MAP kinase activity, possibly leading to affect the response to estrogen inhibitors. . |
Accessions | J3QSD7 ENST00000447079.6 [Q9NYV4-1] ENST00000559663.2 ENST00000581593.1 ENST00000584632.5 H0YLT2 Q9NYV4 A0A2I6PNI6 A0A590UJE9 ENST00000430627.6 [Q9NYV4-2] |