CCS report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	15 studies	26% ± 9%	Explore
plasmacytoid dendritic cell	12 studies	35% ± 10%	Explore
B cell	11 studies	23% ± 4%	Explore
naive B cell	9 studies	21% ± 4%	Explore
astrocyte	8 studies	26% ± 11%	Explore
memory B cell	7 studies	21% ± 3%	Explore
CD16-negative, CD56-bright natural killer cell, human	7 studies	20% ± 2%	Explore
CD16-positive, CD56-dim natural killer cell, human	7 studies	18% ± 3%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	7 studies	19% ± 3%	Explore
natural killer cell	7 studies	19% ± 3%	Explore
regulatory T cell	7 studies	18% ± 2%	Explore
myofibroblast cell	6 studies	23% ± 5%	Explore
pericyte	6 studies	20% ± 5%	Explore
epithelial cell	6 studies	30% ± 14%	Explore
CD8-positive, alpha-beta T cell	5 studies	20% ± 4%	Explore
endothelial cell	5 studies	23% ± 9%	Explore
smooth muscle cell	5 studies	20% ± 4%	Explore
abnormal cell	5 studies	22% ± 3%	Explore
classical monocyte	4 studies	25% ± 8%	Explore
connective tissue cell	4 studies	28% ± 8%	Explore
plasma cell	4 studies	29% ± 6%	Explore
platelet	4 studies	21% ± 5%	Explore
hepatocyte	4 studies	27% ± 14%	Explore
hematopoietic stem cell	4 studies	21% ± 3%	Explore
hematopoietic precursor cell	3 studies	27% ± 10%	Explore
CD4-positive, alpha-beta memory T cell	3 studies	19% ± 4%	Explore
conventional dendritic cell	3 studies	37% ± 15%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	20% ± 4%	Explore
mature NK T cell	3 studies	19% ± 3%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	3 studies	17% ± 0%	Explore
non-classical monocyte	3 studies	26% ± 2%	Explore
epithelial cell of proximal tubule	3 studies	19% ± 1%	Explore
immature B cell	3 studies	25% ± 4%	Explore
macrophage	3 studies	27% ± 9%	Explore
ciliated cell	3 studies	22% ± 3%	Explore
retinal rod cell	3 studies	23% ± 2%	Explore
glutamatergic neuron	3 studies	38% ± 17%	Explore
oligodendrocyte precursor cell	3 studies	19% ± 3%	Explore
erythrocyte	3 studies	31% ± 17%	Explore
basal cell	3 studies	29% ± 11%	Explore
neuron	3 studies	26% ± 6%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	8 studies	19% ± 7%	Explore
lung	4 studies	25% ± 7%	Explore
eye	3 studies	20% ± 5%	Explore
brain	3 studies	32% ± 12%	Explore
intestine	3 studies	25% ± 12%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
adrenal gland	100%	2886.75	258 / 258	100%	53.57	230 / 230
esophagus	100%	2081.80	1445 / 1445	100%	30.98	183 / 183
liver	100%	3377.98	226 / 226	100%	73.78	406 / 406
thymus	100%	2585.77	653 / 653	100%	70.65	605 / 605
uterus	100%	2574.13	170 / 170	100%	64.58	459 / 459
brain	100%	1546.95	2632 / 2642	100%	63.80	705 / 705
skin	100%	1480.73	1809 / 1809	100%	52.03	470 / 472
kidney	100%	2227.53	89 / 89	100%	57.72	897 / 901
ovary	100%	3126.67	180 / 180	100%	36.83	428 / 430
prostate	100%	3235.18	245 / 245	99%	80.25	499 / 502
stomach	100%	1820.19	359 / 359	99%	35.51	284 / 286
intestine	100%	2758.68	966 / 966	99%	39.99	523 / 527
lung	100%	1738.56	577 / 578	99%	47.18	1147 / 1155
pancreas	100%	1283.63	328 / 328	99%	58.30	176 / 178
bladder	100%	2468.57	21 / 21	99%	53.29	498 / 504
breast	100%	1849.51	459 / 459	98%	54.02	1096 / 1118
adipose	100%	1705.99	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	106.18	80 / 80
lymph node	0%	0	0 / 0	100%	84.71	29 / 29
spleen	100%	3111.10	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	51.63	45 / 45
ureter	0%	0	0 / 0	100%	62.80	1 / 1
blood vessel	100%	1572.00	1333 / 1335	0%	0	0 / 0
heart	100%	1444.30	858 / 861	0%	0	0 / 0
peripheral blood	99%	1424.62	922 / 929	0%	0	0 / 0
muscle	98%	860.05	787 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0