Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1983.56 | 1445 / 1445 | 100% | 29.16 | 183 / 183 |
intestine | 100% | 2046.75 | 966 / 966 | 100% | 30.09 | 527 / 527 |
lung | 100% | 2482.03 | 578 / 578 | 100% | 28.45 | 1155 / 1155 |
ovary | 100% | 1721.88 | 180 / 180 | 100% | 29.17 | 430 / 430 |
pancreas | 100% | 1481.50 | 328 / 328 | 100% | 22.94 | 178 / 178 |
stomach | 100% | 1746.50 | 359 / 359 | 100% | 29.81 | 286 / 286 |
uterus | 100% | 1739.55 | 170 / 170 | 100% | 34.86 | 459 / 459 |
brain | 100% | 2329.82 | 2641 / 2642 | 100% | 31.06 | 705 / 705 |
breast | 100% | 2332.03 | 459 / 459 | 100% | 29.20 | 1116 / 1118 |
thymus | 100% | 2515.60 | 653 / 653 | 100% | 31.38 | 602 / 605 |
bladder | 100% | 1906.38 | 21 / 21 | 99% | 26.82 | 501 / 504 |
kidney | 100% | 2082.20 | 89 / 89 | 99% | 21.28 | 892 / 901 |
skin | 100% | 2358.79 | 1809 / 1809 | 99% | 28.13 | 467 / 472 |
liver | 100% | 1284.07 | 225 / 226 | 99% | 16.23 | 403 / 406 |
prostate | 100% | 1627.16 | 244 / 245 | 99% | 19.18 | 498 / 502 |
adrenal gland | 100% | 2749.00 | 258 / 258 | 97% | 20.70 | 224 / 230 |
adipose | 100% | 2446.45 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 39.31 | 29 / 29 |
spleen | 100% | 3182.66 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 40.97 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.80 | 1 / 1 |
blood vessel | 100% | 2329.43 | 1334 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 3349.32 | 924 / 929 | 0% | 0 | 0 / 0 |
muscle | 99% | 1244.80 | 794 / 803 | 0% | 0 | 0 / 0 |
heart | 96% | 1483.71 | 827 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 83% | 9.96 | 66 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016567 | Biological process | protein ubiquitination |
GO_0000045 | Biological process | autophagosome assembly |
GO_0006612 | Biological process | protein targeting to membrane |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0043653 | Biological process | mitochondrial fragmentation involved in apoptotic process |
GO_0050765 | Biological process | negative regulation of phagocytosis |
GO_0000422 | Biological process | autophagy of mitochondrion |
GO_0015031 | Biological process | protein transport |
GO_0061723 | Biological process | glycophagy |
GO_0044804 | Biological process | nucleophagy |
GO_0005829 | Cellular component | cytosol |
GO_0000407 | Cellular component | phagophore assembly site |
GO_0005737 | Cellular component | cytoplasm |
GO_0034274 | Cellular component | Atg12-Atg5-Atg16 complex |
GO_0019899 | Molecular function | enzyme binding |
GO_0019787 | Molecular function | ubiquitin-like protein transferase activity |
GO_0019777 | Molecular function | Atg12 transferase activity |
GO_0141046 | Molecular function | Atg8-family conjugating enzyme activity |
GO_0019776 | Molecular function | Atg8-family ligase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | ATG3 |
Protein name | Ubiquitin-like-conjugating enzyme ATG3 (EC 2.3.2.-) (Autophagy-related protein 3) (APG3-like) (hApg3) (Protein PC3-96) Autophagy related 3 |
Synonyms | APG3 APG3L |
Description | FUNCTION: E2 conjugating enzyme that catalyzes the covalent conjugation of the C-terminal Gly of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to the amino group of phosphatidylethanolamine (PE)-containing lipids in the membrane resulting in membrane-bound ATG8-like proteins which is one of the key steps in the development of autophagic isolation membranes during autophagosome formation . Cycles back and forth between binding to ATG7 for loading with the ATG8-like proteins and binding to E3 enzyme, composed of ATG12, ATG5 and ATG16L1 to promote ATG8-like proteins lipidation . Also plays a role as a membrane curvature sensor that facilitates LC3/GABARAP lipidation by sensing local membrane stress associated with lipid-packing defects as occurs with high molar proportions of conical lipids or strident membrane curvature (By similarity). Interacts with negatively-charged membranes promoting membrane tethering and enhancing LC3/GABARAP lipidation . Also acts as an autocatalytic E2-like enzyme by catalyzing the conjugation of ATG12 to itself in an ATG7-dependent manner, this complex thus formed, plays a role in mitochondrial homeostasis but not in autophagy (By similarity). ATG12-ATG3 conjugation promotes late endosome to lysosome trafficking and basal autophagosome maturation via its interaction with PDCD6IP (By similarity). ATG12-ATG3 conjugate is also formed upon viccina virus infection, leading to the disruption the cellular autophagy which is not necessary for vaccinia survival and proliferation (By similarity). Promotes primary ciliogenesis by removing OFD1 from centriolar satellites via the autophagic pathway (By similarity). . |
Accessions | F8WDI0 ENST00000496423.1 ENST00000283290.10 [Q9NT62-1] ENST00000402314.6 [Q9NT62-2] Q9NT62 |