Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 12 studies | 33% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 9206.21 | 578 / 578 | 98% | 26.98 | 1127 / 1155 |
thymus | 98% | 2457.42 | 643 / 653 | 98% | 35.87 | 594 / 605 |
breast | 98% | 1805.25 | 450 / 459 | 95% | 20.62 | 1061 / 1118 |
intestine | 95% | 4499.56 | 915 / 966 | 97% | 24.63 | 513 / 527 |
kidney | 96% | 2107.16 | 85 / 89 | 96% | 22.86 | 866 / 901 |
prostate | 92% | 1710.98 | 226 / 245 | 96% | 13.52 | 482 / 502 |
stomach | 86% | 1333.78 | 310 / 359 | 95% | 22.58 | 273 / 286 |
bladder | 86% | 1713.76 | 18 / 21 | 92% | 21.30 | 465 / 504 |
esophagus | 84% | 1165.27 | 1208 / 1445 | 94% | 14.99 | 172 / 183 |
adrenal gland | 95% | 1553.83 | 245 / 258 | 81% | 8.92 | 187 / 230 |
uterus | 76% | 957.73 | 129 / 170 | 96% | 19.23 | 441 / 459 |
brain | 71% | 912.67 | 1872 / 2642 | 99% | 18.66 | 697 / 705 |
liver | 87% | 1155.97 | 196 / 226 | 83% | 12.44 | 335 / 406 |
skin | 69% | 958.85 | 1252 / 1809 | 96% | 30.73 | 455 / 472 |
pancreas | 31% | 355.13 | 102 / 328 | 98% | 28.40 | 175 / 178 |
ovary | 32% | 369.91 | 57 / 180 | 76% | 9.66 | 327 / 430 |
lymph node | 0% | 0 | 0 / 0 | 100% | 174.33 | 29 / 29 |
peripheral blood | 100% | 37101.70 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 23936.27 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 34.58 | 45 / 45 |
adipose | 99% | 2713.78 | 1192 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 16.80 | 77 / 80 |
blood vessel | 64% | 1227.33 | 861 / 1335 | 0% | 0 | 0 / 0 |
heart | 38% | 464.67 | 328 / 861 | 0% | 0 | 0 / 0 |
muscle | 5% | 52.04 | 44 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007165 | Biological process | signal transduction |
GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
GO_0090630 | Biological process | activation of GTPase activity |
GO_0032587 | Cellular component | ruffle membrane |
GO_0035578 | Cellular component | azurophil granule lumen |
GO_0034774 | Cellular component | secretory granule lumen |
GO_0005829 | Cellular component | cytosol |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | ARHGAP45 |
Protein name | ARHGAP45 HMHA1 protein Rho GTPase-activating protein 45 [Cleaved into: Minor histocompatibility antigen HA-1 (mHag HA-1)] Rho GTPase activating protein 45 |
Synonyms | HMHA1 KIAA0223 |
Description | FUNCTION: Contains a GTPase activator for the Rho-type GTPases (RhoGAP) domain that would be able to negatively regulate the actin cytoskeleton as well as cell spreading. However, also contains N-terminally a BAR-domin which is able to play an autoinhibitory effect on this RhoGAP activity. .; FUNCTION: Precursor of the histocompatibility antigen HA-1. More generally, minor histocompatibility antigens (mHags) refer to immunogenic peptide which, when complexed with MHC, can generate an immune response after recognition by specific T-cells. The peptides are derived from polymorphic intracellular proteins, which are cleaved by normal pathways of antigen processing. The binding of these peptides to MHC class I or class II molecules and its expression on the cell surface can stimulate T-cell responses and thereby trigger graft rejection or graft-versus-host disease (GVHD) after hematopoietic stem cell transplantation from HLA-identical sibling donor. GVHD is a frequent complication after bone marrow transplantation (BMT), due to mismatch of minor histocompatibility antigen in HLA-matched sibling marrow transplants. Specifically, mismatching for mHag HA-1 which is recognized as immunodominant, is shown to be associated with the development of severe GVHD after HLA-identical BMT. HA-1 is presented to the cell surface by MHC class I HLA-A*0201, but also by other HLA-A alleles. This complex specifically elicits donor-cytotoxic T-lymphocyte (CTL) reactivity against hematologic malignancies after treatment by HLA-identical allogenic BMT. It induces cell recognition and lysis by CTL. . |
Accessions | ENST00000587602.5 ENST00000539243.6 [Q92619-2] Q8IYN3 ENST00000313093.7 [Q92619-1] ENST00000591169.2 ENST00000543365.5 F5H1R4 K7EM55 K7ES92 K7EQA4 ENST00000586866.5 ENST00000590214.5 ENST00000590577.2 K7EM85 A0A087X1A3 A0A2X0U2E5 Q92619 K7ES98 ENST00000587186.5 |