AGTRAP report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
classical monocyte	25 studies	47% ± 18%	Explore
natural killer cell	23 studies	28% ± 9%	Explore
non-classical monocyte	20 studies	40% ± 16%	Explore
monocyte	16 studies	32% ± 13%	Explore
ciliated cell	13 studies	32% ± 12%	Explore
macrophage	13 studies	22% ± 6%	Explore
CD16-positive, CD56-dim natural killer cell, human	11 studies	34% ± 8%	Explore
CD8-positive, alpha-beta T cell	10 studies	22% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	9 studies	25% ± 10%	Explore
conventional dendritic cell	7 studies	34% ± 13%	Explore
mature NK T cell	7 studies	25% ± 7%	Explore
gamma-delta T cell	7 studies	22% ± 4%	Explore
dendritic cell	6 studies	24% ± 13%	Explore
mast cell	5 studies	23% ± 6%	Explore
neutrophil	5 studies	37% ± 20%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	20% ± 3%	Explore
myeloid cell	5 studies	32% ± 10%	Explore
fibroblast	5 studies	26% ± 13%	Explore
regulatory T cell	5 studies	23% ± 8%	Explore
endothelial cell	4 studies	27% ± 6%	Explore
epithelial cell	4 studies	36% ± 7%	Explore
endothelial cell of lymphatic vessel	4 studies	25% ± 7%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	26% ± 3%	Explore
intermediate monocyte	4 studies	51% ± 23%	Explore
CD8-positive, alpha-beta memory T cell	3 studies	23% ± 8%	Explore
common myeloid progenitor	3 studies	22% ± 5%	Explore
abnormal cell	3 studies	20% ± 2%	Explore
basal cell	3 studies	33% ± 13%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	24% ± 7%	Explore
mucosal invariant T cell	3 studies	19% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	14 studies	26% ± 7%	Explore
lung	5 studies	27% ± 12%	Explore
liver	3 studies	20% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	1375.67	180 / 180	100%	90.32	430 / 430
thymus	100%	2238.91	653 / 653	100%	78.36	605 / 605
uterus	100%	1532.67	170 / 170	100%	107.76	459 / 459
prostate	100%	4130.22	245 / 245	100%	181.04	500 / 502
pancreas	100%	1885.14	328 / 328	99%	70.31	177 / 178
esophagus	100%	1989.76	1444 / 1445	99%	60.91	182 / 183
skin	100%	2065.57	1809 / 1809	99%	88.89	467 / 472
breast	100%	2348.50	459 / 459	99%	80.22	1106 / 1118
lung	100%	3394.97	578 / 578	99%	75.50	1139 / 1155
intestine	100%	1408.52	965 / 966	99%	53.77	520 / 527
bladder	100%	2229.67	21 / 21	98%	76.00	493 / 504
stomach	99%	1358.31	356 / 359	98%	46.61	281 / 286
kidney	100%	2877.48	89 / 89	94%	67.25	847 / 901
liver	91%	788.15	205 / 226	76%	26.20	310 / 406
brain	73%	628.29	1918 / 2642	90%	45.35	638 / 705
adrenal gland	100%	2332.19	258 / 258	50%	21.24	116 / 230
adipose	100%	2196.77	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	78.87	80 / 80
lymph node	0%	0	0 / 0	100%	63.07	29 / 29
spleen	100%	4360.73	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	93.31	45 / 45
ureter	0%	0	0 / 0	100%	69.84	1 / 1
blood vessel	99%	1582.84	1323 / 1335	0%	0	0 / 0
peripheral blood	98%	12619.78	908 / 929	0%	0	0 / 0
heart	97%	1135.36	838 / 861	0%	0	0 / 0
muscle	94%	1618.57	756 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0