Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 34 studies | 40% ± 18% | |
fibroblast | 19 studies | 28% ± 11% | |
mast cell | 15 studies | 28% ± 7% | |
astrocyte | 15 studies | 40% ± 21% | |
myeloid cell | 13 studies | 35% ± 9% | |
monocyte | 11 studies | 27% ± 8% | |
type I pneumocyte | 11 studies | 37% ± 14% | |
endothelial cell | 11 studies | 34% ± 14% | |
microglial cell | 10 studies | 34% ± 16% | |
adipocyte | 10 studies | 52% ± 16% | |
non-classical monocyte | 9 studies | 21% ± 3% | |
pericyte | 9 studies | 24% ± 8% | |
oligodendrocyte precursor cell | 7 studies | 35% ± 17% | |
classical monocyte | 6 studies | 24% ± 10% | |
hepatocyte | 6 studies | 63% ± 27% | |
smooth muscle cell | 6 studies | 26% ± 8% | |
mononuclear phagocyte | 5 studies | 27% ± 14% | |
GABAergic neuron | 5 studies | 29% ± 7% | |
dendritic cell | 5 studies | 19% ± 3% | |
retinal pigment epithelial cell | 4 studies | 30% ± 6% | |
squamous epithelial cell | 3 studies | 26% ± 8% | |
hepatic stellate cell | 3 studies | 44% ± 20% | |
abnormal cell | 3 studies | 39% ± 15% | |
glial cell | 3 studies | 21% ± 5% | |
precursor B cell | 3 studies | 23% ± 7% | |
epithelial cell | 3 studies | 21% ± 4% | |
cardiac muscle cell | 3 studies | 20% ± 3% | |
tissue-resident macrophage | 3 studies | 55% ± 19% | |
cholangiocyte | 3 studies | 43% ± 27% | |
connective tissue cell | 3 studies | 18% ± 2% | |
ependymal cell | 3 studies | 40% ± 19% | |
adventitial cell | 3 studies | 28% ± 10% | |
endothelial cell of lymphatic vessel | 3 studies | 23% ± 1% | |
myofibroblast cell | 3 studies | 26% ± 5% | |
oligodendrocyte | 3 studies | 29% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 6209.72 | 577 / 578 | 96% | 19.76 | 1108 / 1155 |
liver | 100% | 7856.20 | 226 / 226 | 94% | 16.73 | 383 / 406 |
breast | 99% | 7304.04 | 456 / 459 | 92% | 14.51 | 1032 / 1118 |
thymus | 97% | 2913.26 | 631 / 653 | 95% | 17.93 | 574 / 605 |
esophagus | 97% | 4100.24 | 1397 / 1445 | 93% | 19.82 | 171 / 183 |
ovary | 94% | 3610.73 | 169 / 180 | 93% | 12.32 | 401 / 430 |
bladder | 100% | 6901.10 | 21 / 21 | 86% | 13.14 | 432 / 504 |
skin | 99% | 4876.60 | 1791 / 1809 | 87% | 13.92 | 409 / 472 |
uterus | 88% | 3144.05 | 150 / 170 | 83% | 11.78 | 383 / 459 |
stomach | 87% | 2940.62 | 313 / 359 | 82% | 12.15 | 235 / 286 |
intestine | 99% | 6663.66 | 959 / 966 | 69% | 7.84 | 364 / 527 |
adrenal gland | 100% | 19085.48 | 258 / 258 | 62% | 7.14 | 143 / 230 |
prostate | 89% | 2280.96 | 219 / 245 | 72% | 6.82 | 360 / 502 |
brain | 58% | 1506.61 | 1541 / 2642 | 99% | 40.63 | 700 / 705 |
kidney | 55% | 1146.73 | 49 / 89 | 97% | 29.12 | 870 / 901 |
pancreas | 62% | 997.07 | 204 / 328 | 88% | 12.99 | 156 / 178 |
adipose | 100% | 9252.86 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 99% | 3815.10 | 238 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 94% | 3701.67 | 1254 / 1335 | 0% | 0 | 0 / 0 |
muscle | 93% | 3382.76 | 749 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 14.08 | 40 / 45 |
lymph node | 0% | 0 | 0 / 0 | 76% | 12.42 | 22 / 29 |
heart | 68% | 1382.82 | 587 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 65% | 10.23 | 52 / 80 |
peripheral blood | 52% | 1414.60 | 482 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007040 | Biological process | lysosome organization |
GO_0071300 | Biological process | cellular response to retinoic acid |
GO_0055091 | Biological process | phospholipid homeostasis |
GO_0042158 | Biological process | lipoprotein biosynthetic process |
GO_0071466 | Biological process | cellular response to xenobiotic stimulus |
GO_0010887 | Biological process | negative regulation of cholesterol storage |
GO_0008203 | Biological process | cholesterol metabolic process |
GO_0043691 | Biological process | reverse cholesterol transport |
GO_0032367 | Biological process | intracellular cholesterol transport |
GO_0032489 | Biological process | regulation of Cdc42 protein signal transduction |
GO_0099039 | Biological process | sphingolipid translocation |
GO_0002790 | Biological process | peptide secretion |
GO_0033552 | Biological process | response to vitamin B3 |
GO_0033700 | Biological process | phospholipid efflux |
GO_0006911 | Biological process | phagocytosis, engulfment |
GO_0023061 | Biological process | signal release |
GO_0042632 | Biological process | cholesterol homeostasis |
GO_0140115 | Biological process | export across plasma membrane |
GO_0010745 | Biological process | negative regulation of macrophage derived foam cell differentiation |
GO_0071404 | Biological process | cellular response to low-density lipoprotein particle stimulus |
GO_0007186 | Biological process | G protein-coupled receptor signaling pathway |
GO_0071345 | Biological process | cellular response to cytokine stimulus |
GO_0016197 | Biological process | endosomal transport |
GO_0034380 | Biological process | high-density lipoprotein particle assembly |
GO_0060155 | Biological process | platelet dense granule organization |
GO_0038027 | Biological process | apolipoprotein A-I-mediated signaling pathway |
GO_0090108 | Biological process | positive regulation of high-density lipoprotein particle assembly |
GO_0071397 | Biological process | cellular response to cholesterol |
GO_0010875 | Biological process | positive regulation of cholesterol efflux |
GO_0045332 | Biological process | phospholipid translocation |
GO_0007189 | Biological process | adenylate cyclase-activating G protein-coupled receptor signaling pathway |
GO_0071222 | Biological process | cellular response to lipopolysaccharide |
GO_0033344 | Biological process | cholesterol efflux |
GO_0090107 | Biological process | regulation of high-density lipoprotein particle assembly |
GO_0034616 | Biological process | response to laminar fluid shear stress |
GO_0071806 | Biological process | protein transmembrane transport |
GO_0009306 | Biological process | protein secretion |
GO_0009897 | Cellular component | external side of plasma membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0045121 | Cellular component | membrane raft |
GO_0030139 | Cellular component | endocytic vesicle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0097708 | Cellular component | intracellular vesicle |
GO_0045335 | Cellular component | phagocytic vesicle |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005768 | Cellular component | endosome |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0034188 | Molecular function | apolipoprotein A-I receptor activity |
GO_0090554 | Molecular function | phosphatidylcholine floppase activity |
GO_0090556 | Molecular function | phosphatidylserine floppase activity |
GO_0019905 | Molecular function | syntaxin binding |
GO_0140359 | Molecular function | ABC-type transporter activity |
GO_0015485 | Molecular function | cholesterol binding |
GO_0046623 | Molecular function | sphingolipid floppase activity |
GO_0120020 | Molecular function | cholesterol transfer activity |
GO_0005102 | Molecular function | signaling receptor binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0034185 | Molecular function | apolipoprotein binding |
GO_0008320 | Molecular function | protein transmembrane transporter activity |
GO_0031210 | Molecular function | phosphatidylcholine binding |
GO_0005548 | Molecular function | phospholipid transporter activity |
GO_0140328 | Molecular function | floppase activity |
GO_0005524 | Molecular function | ATP binding |
GO_0051117 | Molecular function | ATPase binding |
GO_0042626 | Molecular function | ATPase-coupled transmembrane transporter activity |
GO_0034186 | Molecular function | apolipoprotein A-I binding |
GO_0008035 | Molecular function | high-density lipoprotein particle binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | ABCA1 |
Protein name | Phospholipid-transporting ATPase ABCA1 (EC 7.6.2.1) (ATP-binding cassette sub-family A member 1) (ATP-binding cassette transporter 1) (ABC-1) (ATP-binding cassette 1) (Cholesterol efflux regulatory protein) ATP-binding cassette, sub-family A (ABC1), member 1 Alternative protein ABCA1 ATP-binding cassette transporter A1 ABCA1 protein ATP binding cassette transporter 1 ATP binding cassette subfamily A member 1 ATP binding cassette subfamily A member 1 (ATP-binding cassette, sub-family A (ABC1), member 1, isoform CRA_b) |
Synonyms | CERP hCG_1789838 ABC1 |
Description | FUNCTION: Catalyzes the translocation of specific phospholipids from the cytoplasmic to the extracellular/lumenal leaflet of membrane coupled to the hydrolysis of ATP . Thereby, participates in phospholipid transfer to apolipoproteins to form nascent high density lipoproteins/HDLs . Transports preferentially phosphatidylcholine over phosphatidylserine . May play a similar role in the efflux of intracellular cholesterol to apolipoproteins and the formation of nascent high density lipoproteins/HDLs . Translocates phospholipids from the outer face of the plasma membrane and forces it through its gateway and annulus into an elongated hydrophobic tunnel in its extracellular domain . . |
Accessions | B2RUU2 ENST00000423487.6 ENST00000374736.8 A5D8U6 ENST00000374733.1 B1AMI1 ENST00000678995.1 A0A7I2V5U0 B7XCW9 O95477 L8E884 B1AMI2 Q9NP93 |