Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 14 studies | 29% ± 14% | |
fibroblast | 11 studies | 22% ± 8% | |
regulatory T cell | 11 studies | 22% ± 5% | |
microglial cell | 8 studies | 25% ± 8% | |
oligodendrocyte precursor cell | 8 studies | 30% ± 14% | |
type I pneumocyte | 7 studies | 26% ± 7% | |
macrophage | 7 studies | 26% ± 9% | |
dendritic cell | 6 studies | 26% ± 11% | |
astrocyte | 6 studies | 29% ± 10% | |
B cell | 5 studies | 23% ± 5% | |
natural killer cell | 5 studies | 19% ± 2% | |
endothelial cell of lymphatic vessel | 5 studies | 23% ± 7% | |
non-classical monocyte | 5 studies | 25% ± 12% | |
epithelial cell | 5 studies | 38% ± 11% | |
adipocyte | 5 studies | 22% ± 5% | |
GABAergic neuron | 5 studies | 35% ± 14% | |
T cell | 4 studies | 17% ± 1% | |
classical monocyte | 4 studies | 26% ± 9% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 4 studies | 20% ± 4% | |
CD4-positive, alpha-beta T cell | 4 studies | 23% ± 6% | |
myeloid cell | 4 studies | 23% ± 2% | |
retinal pigment epithelial cell | 4 studies | 31% ± 11% | |
ciliated cell | 4 studies | 24% ± 4% | |
glutamatergic neuron | 4 studies | 45% ± 14% | |
club cell | 4 studies | 22% ± 7% | |
pericyte | 4 studies | 24% ± 8% | |
smooth muscle cell | 4 studies | 18% ± 1% | |
interneuron | 4 studies | 36% ± 20% | |
oligodendrocyte | 4 studies | 24% ± 3% | |
CD16-negative, CD56-bright natural killer cell, human | 3 studies | 21% ± 2% | |
plasma cell | 3 studies | 27% ± 8% | |
retinal cone cell | 3 studies | 21% ± 4% | |
lymphocyte | 3 studies | 24% ± 3% | |
retinal rod cell | 3 studies | 22% ± 4% | |
abnormal cell | 3 studies | 23% ± 8% | |
leukocyte | 3 studies | 18% ± 3% | |
monocyte | 3 studies | 22% ± 4% | |
type II pneumocyte | 3 studies | 21% ± 6% | |
basal cell | 3 studies | 33% ± 19% | |
transit amplifying cell | 3 studies | 37% ± 28% | |
neuron | 3 studies | 30% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3506.27 | 1445 / 1445 | 100% | 22.26 | 183 / 183 |
lung | 100% | 5142.01 | 578 / 578 | 100% | 22.28 | 1155 / 1155 |
breast | 100% | 4810.42 | 459 / 459 | 100% | 29.96 | 1116 / 1118 |
stomach | 100% | 3064.05 | 359 / 359 | 100% | 17.75 | 285 / 286 |
prostate | 100% | 3932.73 | 245 / 245 | 100% | 27.69 | 500 / 502 |
brain | 100% | 2371.07 | 2630 / 2642 | 100% | 27.23 | 705 / 705 |
thymus | 100% | 5080.42 | 653 / 653 | 100% | 26.62 | 602 / 605 |
intestine | 100% | 3966.74 | 966 / 966 | 99% | 17.84 | 523 / 527 |
bladder | 100% | 4120.76 | 21 / 21 | 99% | 17.62 | 500 / 504 |
ovary | 100% | 4626.88 | 180 / 180 | 99% | 14.06 | 426 / 430 |
kidney | 100% | 3148.39 | 89 / 89 | 99% | 24.21 | 892 / 901 |
uterus | 100% | 4356.61 | 170 / 170 | 99% | 21.26 | 454 / 459 |
pancreas | 100% | 2635.40 | 328 / 328 | 99% | 21.86 | 176 / 178 |
adrenal gland | 100% | 3839.81 | 258 / 258 | 99% | 19.88 | 227 / 230 |
skin | 100% | 3855.46 | 1808 / 1809 | 98% | 35.11 | 464 / 472 |
liver | 100% | 2174.42 | 226 / 226 | 94% | 12.18 | 382 / 406 |
adipose | 100% | 4775.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5518.91 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 34.60 | 29 / 29 |
muscle | 100% | 4168.82 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4997.76 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 19.13 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.14 | 1 / 1 |
heart | 98% | 2262.87 | 842 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 17.10 | 72 / 80 |
peripheral blood | 86% | 3094.42 | 795 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0035196 | Biological process | miRNA processing |
GO_0010608 | Biological process | post-transcriptional regulation of gene expression |
GO_0005634 | Cellular component | nucleus |
GO_0035198 | Molecular function | miRNA binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | ZC3H7A |
Protein name | ZC3H7A protein Zinc finger CCCH domain-containing protein 7A Zinc finger CCCH-type containing 7A |
Synonyms | ZC3H7 HSPC055 hCG_14614 ZC3HDC7 |
Description | FUNCTION: May be a specific regulator of miRNA biogenesis. Binds to microRNAs MIR7-1, MIR16-2 and MIR29A hairpins recognizing the 3'-ATA(A/T)-5' motif in the apical loop. . |
Accessions | ENST00000572870.5 ENST00000571405.5 ENST00000576018.5 ENST00000575984.1 [Q8IWR0-2] Q8IWR0 I3L3F9 ENST00000396516.6 [Q8IWR0-1] Q8IWJ6 ENST00000575041.5 I3L2N8 I3L282 ENST00000574995.1 I3L382 I3L1Y3 ENST00000355758.9 [Q8IWR0-1] I3L3S2 ENST00000572781.5 I3L323 ENST00000576009.1 ENST00000571198.5 I3L2K5 |