Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 3620.47 | 2642 / 2642 | 100% | 86.80 | 705 / 705 |
breast | 100% | 3204.78 | 459 / 459 | 100% | 90.61 | 1118 / 1118 |
esophagus | 100% | 2777.88 | 1445 / 1445 | 100% | 69.59 | 183 / 183 |
ovary | 100% | 3067.97 | 180 / 180 | 100% | 58.40 | 430 / 430 |
stomach | 100% | 2165.49 | 359 / 359 | 100% | 68.98 | 286 / 286 |
intestine | 100% | 2963.94 | 966 / 966 | 100% | 77.22 | 526 / 527 |
uterus | 100% | 3343.92 | 170 / 170 | 100% | 80.47 | 458 / 459 |
liver | 100% | 2017.35 | 226 / 226 | 100% | 45.03 | 405 / 406 |
lung | 100% | 2503.95 | 576 / 578 | 100% | 74.95 | 1155 / 1155 |
bladder | 100% | 2901.05 | 21 / 21 | 100% | 65.25 | 502 / 504 |
prostate | 100% | 2516.21 | 245 / 245 | 100% | 50.80 | 500 / 502 |
skin | 100% | 3716.29 | 1809 / 1809 | 100% | 110.46 | 470 / 472 |
thymus | 100% | 2777.16 | 653 / 653 | 100% | 71.45 | 602 / 605 |
pancreas | 100% | 1708.26 | 327 / 328 | 99% | 57.43 | 176 / 178 |
kidney | 100% | 2707.21 | 89 / 89 | 99% | 51.98 | 888 / 901 |
adrenal gland | 100% | 3232.40 | 258 / 258 | 97% | 64.11 | 222 / 230 |
adipose | 100% | 3044.74 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3106.13 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 69.44 | 29 / 29 |
spleen | 100% | 2909.81 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 73.10 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 18.50 | 1 / 1 |
muscle | 100% | 3005.33 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 2092.14 | 853 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 60.66 | 78 / 80 |
peripheral blood | 78% | 1641.88 | 729 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006310 | Biological process | DNA recombination |
GO_0030422 | Biological process | siRNA processing |
GO_0035194 | Biological process | regulatory ncRNA-mediated post-transcriptional gene silencing |
GO_1902555 | Cellular component | endoribonuclease complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0001673 | Cellular component | male germ cell nucleus |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0004519 | Molecular function | endonuclease activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0003697 | Molecular function | single-stranded DNA binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | TSN |
Protein name | Translin (EC 3.1.-.-) (Component 3 of promoter of RISC) (C3PO) Translin (Component 3 of promoter of RISC) Translin |
Synonyms | hCG_37642 |
Description | FUNCTION: DNA-binding protein that specifically recognizes consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. Seems to recognize single-stranded DNA ends generated by staggered breaks occurring at recombination hot spots.; FUNCTION: Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand. FUNCTION: DNA-binding protein that specifically recognizes consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. Seems to recognize single-stranded DNA ends generated by staggered breaks occurring at recombination hot spots. .; FUNCTION: Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand. . FUNCTION: DNA-binding protein that specifically recognizes consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. Seems to recognize single-stranded DNA ends generated by staggered breaks occurring at recombination hot spots. .; FUNCTION: Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand. . |
Accessions | ENST00000455432.5 H7C1D4 A0A0J9YVW2 ENST00000409193.1 Q15631 ENST00000467324.5 ENST00000490104.5 ENST00000389682.8 [Q15631-1] E9PGT1 ENST00000478165.5 B3KRM8 A0A0J9YX41 ENST00000536142.5 [Q15631-2] ENST00000490717.5 |