Name | Number of supported studies | Average coverage | |
---|---|---|---|
mast cell | 11 studies | 34% ± 11% | |
oligodendrocyte precursor cell | 10 studies | 32% ± 9% | |
GABAergic neuron | 9 studies | 48% ± 22% | |
glutamatergic neuron | 9 studies | 45% ± 24% | |
astrocyte | 9 studies | 25% ± 10% | |
dendritic cell | 7 studies | 23% ± 5% | |
fibroblast | 7 studies | 25% ± 8% | |
interneuron | 6 studies | 47% ± 17% | |
T cell | 6 studies | 29% ± 8% | |
pericyte | 6 studies | 20% ± 2% | |
neuron | 4 studies | 26% ± 9% | |
endothelial cell | 4 studies | 39% ± 17% | |
microglial cell | 4 studies | 29% ± 6% | |
CD4-positive, alpha-beta T cell | 4 studies | 32% ± 11% | |
monocyte | 4 studies | 26% ± 3% | |
natural killer cell | 4 studies | 34% ± 3% | |
GABAergic interneuron | 3 studies | 37% ± 4% | |
CD8-positive, alpha-beta T cell | 3 studies | 33% ± 8% | |
GABAergic amacrine cell | 3 studies | 23% ± 5% | |
glycinergic amacrine cell | 3 studies | 20% ± 2% | |
ciliated cell | 3 studies | 26% ± 7% | |
lymphocyte | 3 studies | 46% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 99% | 1704.92 | 1434 / 1445 | 99% | 17.58 | 182 / 183 |
adrenal gland | 100% | 2041.60 | 257 / 258 | 97% | 8.17 | 223 / 230 |
lung | 99% | 937.04 | 573 / 578 | 97% | 9.02 | 1117 / 1155 |
uterus | 100% | 2149.71 | 170 / 170 | 95% | 12.21 | 438 / 459 |
breast | 98% | 970.73 | 452 / 459 | 96% | 15.69 | 1077 / 1118 |
bladder | 100% | 2516.57 | 21 / 21 | 94% | 11.88 | 474 / 504 |
ovary | 100% | 1866.36 | 180 / 180 | 92% | 7.38 | 397 / 430 |
brain | 92% | 921.80 | 2425 / 2642 | 97% | 7.34 | 682 / 705 |
stomach | 100% | 934.37 | 358 / 359 | 87% | 7.60 | 250 / 286 |
prostate | 100% | 1983.92 | 244 / 245 | 87% | 6.01 | 436 / 502 |
intestine | 100% | 1420.21 | 965 / 966 | 83% | 6.38 | 435 / 527 |
kidney | 94% | 984.00 | 84 / 89 | 79% | 4.58 | 714 / 901 |
thymus | 95% | 787.37 | 621 / 653 | 75% | 4.15 | 453 / 605 |
pancreas | 70% | 286.49 | 230 / 328 | 99% | 8.46 | 176 / 178 |
skin | 100% | 1866.48 | 1808 / 1809 | 68% | 4.74 | 321 / 472 |
spleen | 100% | 2052.59 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.17 | 1 / 1 |
adipose | 98% | 1093.92 | 1183 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 14.39 | 43 / 45 |
peripheral blood | 95% | 1417.19 | 879 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 13.11 | 27 / 29 |
blood vessel | 78% | 454.66 | 1040 / 1335 | 0% | 0 | 0 / 0 |
heart | 73% | 356.44 | 626 / 861 | 0% | 0 | 0 / 0 |
liver | 14% | 46.28 | 31 / 226 | 15% | 0.69 | 62 / 406 |
eye | 0% | 0 | 0 / 0 | 29% | 0.90 | 23 / 80 |
muscle | 11% | 36.83 | 88 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0050847 | Biological process | progesterone receptor signaling pathway |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0071393 | Biological process | cellular response to progesterone stimulus |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0001650 | Cellular component | fibrillar center |
GO_0000118 | Cellular component | histone deacetylase complex |
GO_0005829 | Cellular component | cytosol |
GO_0005667 | Cellular component | transcription regulator complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0001223 | Molecular function | transcription coactivator binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0033142 | Molecular function | nuclear progesterone receptor binding |
GO_0030374 | Molecular function | nuclear receptor coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | TRERF1 |
Protein name | Breast cancer anti-estrogen resistance 2 (Transcriptional regulating factor 1) Transcriptional-regulating factor 1 (Breast cancer anti-estrogen resistance 2) (Transcriptional-regulating protein 132) (Zinc finger protein rapa) (Zinc finger transcription factor TReP-132) Transcriptional regulating factor 1 Alternative protein TRERF1 |
Synonyms | BCAR2 RAPA TREP132 |
Description | FUNCTION: Binds DNA and activates transcription of CYP11A1. Interaction with CREBBP and EP300 results in a synergistic transcriptional activation of CYP11A1. . |
Accessions | ENST00000372922.8 [Q96PN7-1] ENST00000695966.1 [Q96PN7-1] ENST00000354325.2 [Q96PN7-4] ENST00000541110.5 L8EBC3 ENST00000695947.1 ENST00000340840.6 [Q96PN7-5] A0A8Q3SI57 Q96PN7 ENST00000372917.9 Q05GC8 A0A8Q3WKV2 ENST00000695948.1 |