Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 18 studies | 48% ± 20% | |
endothelial cell | 18 studies | 31% ± 14% | |
ciliated cell | 13 studies | 33% ± 10% | |
oligodendrocyte precursor cell | 13 studies | 41% ± 19% | |
macrophage | 12 studies | 33% ± 16% | |
microglial cell | 12 studies | 42% ± 13% | |
pericyte | 11 studies | 37% ± 14% | |
glutamatergic neuron | 10 studies | 38% ± 25% | |
GABAergic neuron | 8 studies | 41% ± 22% | |
retinal rod cell | 8 studies | 35% ± 13% | |
B cell | 8 studies | 31% ± 12% | |
adipocyte | 8 studies | 34% ± 7% | |
basal cell | 7 studies | 30% ± 16% | |
retinal cone cell | 7 studies | 40% ± 17% | |
dendritic cell | 7 studies | 32% ± 11% | |
fibroblast | 7 studies | 23% ± 5% | |
club cell | 6 studies | 21% ± 5% | |
neuron | 6 studies | 39% ± 16% | |
interneuron | 6 studies | 40% ± 21% | |
epithelial cell | 6 studies | 39% ± 13% | |
smooth muscle cell | 6 studies | 28% ± 9% | |
endothelial cell of lymphatic vessel | 6 studies | 33% ± 4% | |
myeloid cell | 6 studies | 36% ± 11% | |
type I pneumocyte | 6 studies | 30% ± 9% | |
respiratory goblet cell | 5 studies | 26% ± 5% | |
cardiac muscle cell | 5 studies | 42% ± 9% | |
Mueller cell | 5 studies | 30% ± 10% | |
monocyte | 5 studies | 34% ± 8% | |
type II pneumocyte | 5 studies | 22% ± 5% | |
granule cell | 4 studies | 28% ± 9% | |
retinal pigment epithelial cell | 4 studies | 39% ± 14% | |
goblet cell | 4 studies | 35% ± 31% | |
secretory cell | 3 studies | 24% ± 4% | |
non-classical monocyte | 3 studies | 21% ± 5% | |
GABAergic interneuron | 3 studies | 26% ± 6% | |
retinal ganglion cell | 3 studies | 26% ± 3% | |
plasma cell | 3 studies | 23% ± 4% | |
amacrine cell | 3 studies | 28% ± 4% | |
retina horizontal cell | 3 studies | 21% ± 7% | |
hepatocyte | 3 studies | 52% ± 24% | |
ependymal cell | 3 studies | 50% ± 17% | |
alveolar macrophage | 3 studies | 37% ± 11% | |
naive B cell | 3 studies | 21% ± 7% | |
lymphocyte | 3 studies | 23% ± 3% | |
brush cell | 3 studies | 29% ± 8% | |
oligodendrocyte | 3 studies | 35% ± 7% | |
mucus secreting cell | 3 studies | 30% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 5081.64 | 1445 / 1445 | 100% | 36.31 | 183 / 183 |
stomach | 100% | 5962.83 | 359 / 359 | 100% | 37.26 | 286 / 286 |
intestine | 100% | 5941.63 | 966 / 966 | 100% | 32.26 | 526 / 527 |
bladder | 100% | 6199.33 | 21 / 21 | 100% | 43.99 | 503 / 504 |
skin | 100% | 7293.81 | 1809 / 1809 | 100% | 27.21 | 471 / 472 |
breast | 100% | 4914.05 | 459 / 459 | 100% | 29.42 | 1113 / 1118 |
ovary | 100% | 2087.32 | 180 / 180 | 100% | 23.61 | 428 / 430 |
thymus | 100% | 7994.94 | 653 / 653 | 100% | 32.39 | 602 / 605 |
brain | 99% | 5228.67 | 2628 / 2642 | 100% | 34.94 | 705 / 705 |
prostate | 100% | 3785.04 | 245 / 245 | 99% | 19.16 | 499 / 502 |
lung | 100% | 6024.45 | 577 / 578 | 99% | 26.92 | 1148 / 1155 |
kidney | 100% | 4522.85 | 89 / 89 | 99% | 20.94 | 889 / 901 |
uterus | 100% | 3158.71 | 170 / 170 | 98% | 24.64 | 452 / 459 |
pancreas | 93% | 1744.42 | 304 / 328 | 99% | 46.26 | 176 / 178 |
adrenal gland | 100% | 3181.53 | 258 / 258 | 91% | 14.24 | 210 / 230 |
liver | 98% | 1959.82 | 222 / 226 | 77% | 8.53 | 312 / 406 |
adipose | 100% | 4642.70 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 23.88 | 29 / 29 |
muscle | 100% | 9445.05 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5438.77 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 33.42 | 1 / 1 |
blood vessel | 100% | 3883.38 | 1330 / 1335 | 0% | 0 | 0 / 0 |
heart | 100% | 9949.51 | 857 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 22.25 | 44 / 45 |
eye | 0% | 0 | 0 / 0 | 98% | 14.85 | 78 / 80 |
peripheral blood | 80% | 2313.11 | 744 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0050772 | Biological process | positive regulation of axonogenesis |
GO_0048813 | Biological process | dendrite morphogenesis |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0048311 | Biological process | mitochondrion distribution |
GO_0006605 | Biological process | protein targeting |
GO_0098957 | Biological process | anterograde axonal transport of mitochondrion |
GO_0022008 | Biological process | neurogenesis |
GO_0008333 | Biological process | endosome to lysosome transport |
GO_0006493 | Biological process | protein O-linked glycosylation |
GO_0047496 | Biological process | vesicle transport along microtubule |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005739 | Cellular component | mitochondrion |
GO_0005769 | Cellular component | early endosome |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0030425 | Cellular component | dendrite |
GO_0005829 | Cellular component | cytosol |
GO_0005938 | Cellular component | cell cortex |
GO_0044295 | Cellular component | axonal growth cone |
GO_0005737 | Cellular component | cytoplasm |
GO_1904115 | Cellular component | axon cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0030911 | Molecular function | TPR domain binding |
GO_0050811 | Molecular function | GABA receptor binding |
GO_0017022 | Molecular function | myosin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | TRAK1 |
Protein name | Trafficking kinesin-binding protein 1 (106 kDa O-GlcNAc transferase-interacting protein) (Protein Milton) Trafficking kinesin protein 1 Trafficking kinesin protein 1 (Trafficking protein, kinesin binding 1, isoform CRA_c) |
Synonyms | hCG_2000014 OIP106 KIAA1042 |
Description | FUNCTION: Involved in the regulation of endosome-to-lysosome trafficking, including endocytic trafficking of EGF-EGFR complexes and GABA-A receptors . Involved in mitochondrial motility. When O-glycosylated, abolishes mitochondrial motility. Crucial for recruiting OGT to the mitochondrial surface of neuronal processes . TRAK1 and RHOT form an essential protein complex that links KIF5 to mitochondria for light chain-independent, anterograde transport of mitochondria (By similarity). . |
Accessions | ENST00000484786.5 A0A5F9ZH95 C9JC32 ENST00000487159.5 A0A5F9ZI06 H7C3T3 Q9UPV9 F8WDH2 A0A0D9SFL5 ENST00000341421.7 [Q9UPV9-2] ENST00000327628.10 [Q9UPV9-1] ENST00000449246.5 [Q9UPV9-3] A0A087X0N0 A0A0D9SGH2 ENST00000613405.4 ENST00000418790.5 ENST00000427771.1 ENST00000396175.5 ENST00000673621.2 ENST00000672026.1 |