TM9SF3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	40 studies	29% ± 12%	Explore
fibroblast	31 studies	26% ± 9%	Explore
pericyte	20 studies	25% ± 9%	Explore
macrophage	19 studies	27% ± 9%	Explore
smooth muscle cell	18 studies	22% ± 4%	Explore
epithelial cell	14 studies	41% ± 23%	Explore
ciliated cell	13 studies	33% ± 15%	Explore
astrocyte	13 studies	27% ± 12%	Explore
basal cell	12 studies	33% ± 16%	Explore
endothelial cell of vascular tree	12 studies	22% ± 8%	Explore
oligodendrocyte precursor cell	11 studies	30% ± 14%	Explore
goblet cell	11 studies	49% ± 20%	Explore
plasmacytoid dendritic cell	11 studies	26% ± 10%	Explore
oligodendrocyte	11 studies	29% ± 11%	Explore
endothelial cell of lymphatic vessel	10 studies	27% ± 7%	Explore
club cell	10 studies	30% ± 12%	Explore
secretory cell	10 studies	30% ± 14%	Explore
classical monocyte	10 studies	26% ± 11%	Explore
capillary endothelial cell	10 studies	22% ± 7%	Explore
microglial cell	10 studies	28% ± 9%	Explore
natural killer cell	9 studies	23% ± 5%	Explore
GABAergic neuron	9 studies	35% ± 20%	Explore
endothelial cell of artery	9 studies	23% ± 3%	Explore
mast cell	8 studies	22% ± 7%	Explore
monocyte	8 studies	25% ± 6%	Explore
respiratory goblet cell	8 studies	40% ± 9%	Explore
glutamatergic neuron	8 studies	39% ± 26%	Explore
vein endothelial cell	8 studies	25% ± 7%	Explore
B cell	7 studies	19% ± 3%	Explore
type I pneumocyte	7 studies	21% ± 6%	Explore
conventional dendritic cell	7 studies	24% ± 10%	Explore
myeloid cell	7 studies	30% ± 11%	Explore
connective tissue cell	7 studies	26% ± 9%	Explore
leukocyte	6 studies	24% ± 4%	Explore
progenitor cell	6 studies	26% ± 9%	Explore
myofibroblast cell	6 studies	25% ± 8%	Explore
adipocyte	6 studies	22% ± 5%	Explore
T cell	5 studies	24% ± 7%	Explore
non-classical monocyte	5 studies	26% ± 10%	Explore
neuron	5 studies	41% ± 13%	Explore
transit amplifying cell	5 studies	39% ± 16%	Explore
plasma cell	5 studies	30% ± 11%	Explore
mucus secreting cell	5 studies	52% ± 27%	Explore
dendritic cell	5 studies	31% ± 19%	Explore
mononuclear phagocyte	5 studies	23% ± 7%	Explore
lymphocyte	5 studies	30% ± 11%	Explore
gamma-delta T cell	5 studies	24% ± 8%	Explore
interneuron	5 studies	43% ± 24%	Explore
alveolar macrophage	4 studies	24% ± 9%	Explore
duct epithelial cell	4 studies	38% ± 26%	Explore
squamous epithelial cell	4 studies	37% ± 25%	Explore
pancreatic A cell	4 studies	40% ± 23%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	4 studies	22% ± 4%	Explore
CD8-positive, alpha-beta T cell	4 studies	22% ± 3%	Explore
effector memory CD8-positive, alpha-beta T cell	4 studies	22% ± 4%	Explore
hematopoietic precursor cell	4 studies	27% ± 8%	Explore
mature NK T cell	4 studies	23% ± 3%	Explore
abnormal cell	4 studies	30% ± 11%	Explore
enterocyte	4 studies	27% ± 4%	Explore
intestinal crypt stem cell	4 studies	31% ± 8%	Explore
cardiac muscle cell	4 studies	17% ± 1%	Explore
hepatocyte	4 studies	47% ± 30%	Explore
luminal cell of prostate epithelium	4 studies	42% ± 8%	Explore
type II pneumocyte	4 studies	24% ± 9%	Explore
enteroendocrine cell	4 studies	31% ± 15%	Explore
ionocyte	3 studies	38% ± 8%	Explore
type B pancreatic cell	3 studies	46% ± 28%	Explore
CD16-positive, CD56-dim natural killer cell, human	3 studies	24% ± 3%	Explore
CD4-positive, alpha-beta T cell	3 studies	22% ± 6%	Explore
glomerular endothelial cell	3 studies	27% ± 5%	Explore
GABAergic interneuron	3 studies	21% ± 3%	Explore
amacrine cell	3 studies	21% ± 3%	Explore
retina horizontal cell	3 studies	25% ± 2%	Explore
retinal cone cell	3 studies	26% ± 3%	Explore
retinal pigment epithelial cell	3 studies	45% ± 12%	Explore
serous secreting cell	3 studies	20% ± 3%	Explore
mucosal invariant T cell	3 studies	16% ± 0%	Explore
Mueller cell	3 studies	19% ± 3%	Explore
acinar cell	3 studies	51% ± 31%	Explore
mesothelial cell	3 studies	19% ± 3%	Explore
CD8-positive, alpha-beta memory T cell	3 studies	23% ± 3%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	28% ± 7%	Explore
regulatory T cell	3 studies	19% ± 4%	Explore
muscle cell	3 studies	28% ± 14%	Explore
pancreatic ductal cell	3 studies	51% ± 28%	Explore
ependymal cell	3 studies	30% ± 13%	Explore
granule cell	3 studies	19% ± 3%	Explore
mural cell	3 studies	36% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	16 studies	30% ± 18%	Explore
lung	12 studies	28% ± 13%	Explore
intestine	7 studies	25% ± 8%	Explore
peripheral blood	4 studies	33% ± 3%	Explore
eye	4 studies	26% ± 11%	Explore
pancreas	3 studies	47% ± 27%	Explore
heart	3 studies	18% ± 2%	Explore
uterus	3 studies	39% ± 16%	Explore
liver	3 studies	39% ± 15%	Explore
bone marrow	3 studies	24% ± 9%	Explore
adipose	3 studies	21% ± 2%	Explore
prostate	3 studies	22% ± 5%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	10149.92	1445 / 1445	100%	139.35	183 / 183
intestine	100%	13243.77	966 / 966	100%	163.59	527 / 527
lung	100%	10771.20	578 / 578	100%	113.72	1155 / 1155
pancreas	100%	8143.10	328 / 328	100%	151.64	178 / 178
prostate	100%	11840.82	245 / 245	100%	252.27	502 / 502
breast	100%	11248.29	459 / 459	100%	140.91	1117 / 1118
brain	100%	6162.79	2634 / 2642	100%	82.10	705 / 705
stomach	100%	13072.41	359 / 359	100%	154.92	285 / 286
bladder	100%	11683.95	21 / 21	100%	115.05	502 / 504
uterus	100%	12034.84	170 / 170	100%	95.52	457 / 459
thymus	100%	11063.40	653 / 653	99%	112.02	601 / 605
liver	100%	7164.50	226 / 226	99%	62.64	403 / 406
ovary	100%	12106.06	180 / 180	99%	61.75	424 / 430
kidney	100%	7469.39	89 / 89	99%	87.04	888 / 901
adrenal gland	100%	9435.22	258 / 258	97%	83.15	224 / 230
skin	100%	11905.62	1809 / 1809	93%	69.99	441 / 472
blood vessel	100%	12469.82	1335 / 1335	0%	0	0 / 0
spleen	100%	6761.64	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	72.76	45 / 45
ureter	0%	0	0 / 0	100%	46.38	1 / 1
adipose	100%	11529.82	1203 / 1204	0%	0	0 / 0
muscle	99%	4246.57	797 / 803	0%	0	0 / 0
heart	98%	5644.17	843 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	97%	46.16	28 / 29
eye	0%	0	0 / 0	88%	45.47	70 / 80
peripheral blood	74%	3829.23	692 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0