Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 27 studies | 36% ± 17% | |
endothelial cell | 26 studies | 40% ± 16% | |
pericyte | 23 studies | 34% ± 18% | |
astrocyte | 20 studies | 61% ± 19% | |
smooth muscle cell | 19 studies | 40% ± 18% | |
B cell | 16 studies | 25% ± 10% | |
oligodendrocyte | 15 studies | 46% ± 15% | |
microglial cell | 15 studies | 59% ± 16% | |
oligodendrocyte precursor cell | 14 studies | 36% ± 13% | |
glutamatergic neuron | 12 studies | 66% ± 18% | |
macrophage | 12 studies | 41% ± 20% | |
GABAergic neuron | 11 studies | 63% ± 20% | |
ciliated cell | 11 studies | 37% ± 16% | |
connective tissue cell | 10 studies | 27% ± 11% | |
naive B cell | 10 studies | 19% ± 2% | |
basal cell | 10 studies | 43% ± 23% | |
epithelial cell | 9 studies | 39% ± 19% | |
adipocyte | 9 studies | 41% ± 14% | |
mesothelial cell | 9 studies | 41% ± 16% | |
myofibroblast cell | 8 studies | 34% ± 16% | |
mast cell | 8 studies | 33% ± 15% | |
endothelial cell of lymphatic vessel | 8 studies | 43% ± 14% | |
neuron | 7 studies | 45% ± 23% | |
club cell | 7 studies | 36% ± 17% | |
type I pneumocyte | 7 studies | 34% ± 13% | |
amacrine cell | 7 studies | 57% ± 21% | |
interneuron | 6 studies | 76% ± 13% | |
retinal ganglion cell | 6 studies | 56% ± 21% | |
hematopoietic stem cell | 6 studies | 36% ± 13% | |
precursor B cell | 6 studies | 62% ± 11% | |
retina horizontal cell | 6 studies | 60% ± 22% | |
retinal cone cell | 6 studies | 55% ± 22% | |
retinal rod cell | 6 studies | 45% ± 23% | |
dendritic cell | 6 studies | 28% ± 7% | |
Mueller cell | 6 studies | 76% ± 22% | |
hematopoietic precursor cell | 5 studies | 35% ± 18% | |
progenitor cell | 5 studies | 48% ± 21% | |
retinal bipolar neuron | 5 studies | 48% ± 24% | |
pro-B cell | 5 studies | 70% ± 10% | |
immature B cell | 5 studies | 35% ± 13% | |
cardiac muscle cell | 5 studies | 43% ± 8% | |
T cell | 5 studies | 31% ± 9% | |
myeloid cell | 5 studies | 33% ± 9% | |
monocyte | 5 studies | 31% ± 10% | |
type II pneumocyte | 5 studies | 30% ± 7% | |
non-classical monocyte | 4 studies | 21% ± 3% | |
podocyte | 4 studies | 50% ± 8% | |
glial cell | 4 studies | 49% ± 18% | |
granule cell | 4 studies | 59% ± 11% | |
CD4-positive, alpha-beta T cell | 4 studies | 24% ± 8% | |
retinal pigment epithelial cell | 4 studies | 52% ± 24% | |
OFF-bipolar cell | 4 studies | 62% ± 29% | |
ON-bipolar cell | 4 studies | 55% ± 31% | |
endothelial cell of vascular tree | 4 studies | 38% ± 14% | |
muscle cell | 4 studies | 42% ± 19% | |
pancreatic A cell | 3 studies | 34% ± 7% | |
conventional dendritic cell | 3 studies | 20% ± 2% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
interstitial cell of Cajal | 3 studies | 29% ± 12% | |
GABAergic interneuron | 3 studies | 68% ± 2% | |
endothelial cell of artery | 3 studies | 22% ± 5% | |
mononuclear phagocyte | 3 studies | 31% ± 7% | |
vein endothelial cell | 3 studies | 38% ± 19% | |
GABAergic amacrine cell | 3 studies | 80% ± 11% | |
glycinergic amacrine cell | 3 studies | 71% ± 12% | |
rod bipolar cell | 3 studies | 59% ± 21% | |
abnormal cell | 3 studies | 24% ± 5% | |
innate lymphoid cell | 3 studies | 31% ± 14% | |
ependymal cell | 3 studies | 76% ± 13% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 49% ± 8% | |
adventitial cell | 3 studies | 36% ± 16% | |
capillary endothelial cell | 3 studies | 38% ± 1% | |
chondrocyte | 3 studies | 46% ± 22% | |
respiratory goblet cell | 3 studies | 50% ± 21% | |
group 3 innate lymphoid cell | 3 studies | 33% ± 9% | |
mucus secreting cell | 3 studies | 37% ± 10% | |
myoepithelial cell | 3 studies | 54% ± 26% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 3832.46 | 180 / 180 | 99% | 9.03 | 427 / 430 |
brain | 99% | 2569.72 | 2627 / 2642 | 100% | 15.46 | 704 / 705 |
thymus | 100% | 2160.71 | 651 / 653 | 100% | 20.56 | 602 / 605 |
prostate | 100% | 2250.51 | 245 / 245 | 99% | 6.84 | 496 / 502 |
breast | 100% | 3106.61 | 459 / 459 | 97% | 11.94 | 1082 / 1118 |
adrenal gland | 95% | 995.81 | 246 / 258 | 96% | 15.07 | 221 / 230 |
uterus | 100% | 3897.57 | 170 / 170 | 87% | 7.92 | 401 / 459 |
lung | 99% | 1827.56 | 575 / 578 | 87% | 6.05 | 1010 / 1155 |
skin | 100% | 2447.92 | 1807 / 1809 | 84% | 6.40 | 396 / 472 |
kidney | 93% | 1119.61 | 83 / 89 | 86% | 6.46 | 779 / 901 |
pancreas | 82% | 626.27 | 270 / 328 | 94% | 5.88 | 168 / 178 |
esophagus | 100% | 3444.73 | 1445 / 1445 | 74% | 4.28 | 135 / 183 |
bladder | 100% | 2859.90 | 21 / 21 | 63% | 3.61 | 315 / 504 |
intestine | 99% | 2561.64 | 961 / 966 | 37% | 1.60 | 197 / 527 |
stomach | 90% | 1718.62 | 322 / 359 | 42% | 2.20 | 121 / 286 |
adipose | 100% | 2889.22 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3795.78 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1297.62 | 241 / 241 | 0% | 0 | 0 / 0 |
muscle | 99% | 1377.74 | 795 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 1608.01 | 831 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 8.82 | 43 / 45 |
eye | 0% | 0 | 0 / 0 | 74% | 3.73 | 59 / 80 |
lymph node | 0% | 0 | 0 / 0 | 55% | 4.53 | 16 / 29 |
peripheral blood | 37% | 810.65 | 341 / 929 | 0% | 0 | 0 / 0 |
liver | 3% | 17.73 | 7 / 226 | 22% | 1.09 | 90 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0005737 | Cellular component | cytoplasm |
GO_0003697 | Molecular function | single-stranded DNA binding |
Gene name | SSBP2 |
Protein name | Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2) Single stranded DNA binding protein 2 |
Synonyms | SSDP2 |
Description | |
Accessions | ENST00000509013.2 ENST00000512923.5 ENST00000505980.5 [P81877-3] ENST00000615665.5 D6RAC5 ENST00000320672.9 [P81877-1] ENST00000514493.5 [P81877-4] ENST00000504985.5 H0Y9M5 ENST00000509053.5 [P81877-2] ENST00000515395.5 [P81877-5] H0Y9V4 A0A087X159 P81877 |