Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| fibroblast | 27 studies | 36% ± 17% | |
| endothelial cell | 26 studies | 40% ± 16% | |
| pericyte | 23 studies | 34% ± 18% | |
| astrocyte | 20 studies | 61% ± 19% | |
| smooth muscle cell | 19 studies | 40% ± 18% | |
| B cell | 16 studies | 25% ± 10% | |
| oligodendrocyte | 15 studies | 46% ± 15% | |
| microglial cell | 15 studies | 59% ± 16% | |
| oligodendrocyte precursor cell | 14 studies | 36% ± 13% | |
| glutamatergic neuron | 12 studies | 66% ± 18% | |
| macrophage | 12 studies | 41% ± 20% | |
| GABAergic neuron | 11 studies | 63% ± 20% | |
| ciliated cell | 11 studies | 37% ± 16% | |
| connective tissue cell | 10 studies | 27% ± 11% | |
| naive B cell | 10 studies | 19% ± 2% | |
| basal cell | 10 studies | 43% ± 23% | |
| epithelial cell | 9 studies | 39% ± 19% | |
| adipocyte | 9 studies | 41% ± 14% | |
| mesothelial cell | 9 studies | 41% ± 16% | |
| myofibroblast cell | 8 studies | 34% ± 16% | |
| mast cell | 8 studies | 33% ± 15% | |
| endothelial cell of lymphatic vessel | 8 studies | 43% ± 14% | |
| neuron | 7 studies | 45% ± 23% | |
| club cell | 7 studies | 36% ± 17% | |
| type I pneumocyte | 7 studies | 34% ± 13% | |
| amacrine cell | 7 studies | 57% ± 21% | |
| interneuron | 6 studies | 76% ± 13% | |
| retinal ganglion cell | 6 studies | 56% ± 21% | |
| hematopoietic stem cell | 6 studies | 36% ± 13% | |
| precursor B cell | 6 studies | 62% ± 11% | |
| retina horizontal cell | 6 studies | 60% ± 22% | |
| retinal cone cell | 6 studies | 55% ± 22% | |
| retinal rod cell | 6 studies | 45% ± 23% | |
| dendritic cell | 6 studies | 28% ± 7% | |
| Mueller cell | 6 studies | 76% ± 22% | |
| hematopoietic precursor cell | 5 studies | 35% ± 18% | |
| progenitor cell | 5 studies | 48% ± 21% | |
| retinal bipolar neuron | 5 studies | 48% ± 24% | |
| pro-B cell | 5 studies | 70% ± 10% | |
| immature B cell | 5 studies | 35% ± 13% | |
| cardiac muscle cell | 5 studies | 43% ± 8% | |
| T cell | 5 studies | 31% ± 9% | |
| myeloid cell | 5 studies | 33% ± 9% | |
| monocyte | 5 studies | 31% ± 10% | |
| type II pneumocyte | 5 studies | 30% ± 7% | |
| non-classical monocyte | 4 studies | 21% ± 3% | |
| podocyte | 4 studies | 50% ± 8% | |
| glial cell | 4 studies | 49% ± 18% | |
| granule cell | 4 studies | 59% ± 11% | |
| CD4-positive, alpha-beta T cell | 4 studies | 24% ± 8% | |
| retinal pigment epithelial cell | 4 studies | 52% ± 24% | |
| OFF-bipolar cell | 4 studies | 62% ± 29% | |
| ON-bipolar cell | 4 studies | 55% ± 31% | |
| endothelial cell of vascular tree | 4 studies | 38% ± 14% | |
| muscle cell | 4 studies | 42% ± 19% | |
| pancreatic A cell | 3 studies | 34% ± 7% | |
| conventional dendritic cell | 3 studies | 20% ± 2% | |
| naive thymus-derived CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
| interstitial cell of Cajal | 3 studies | 29% ± 12% | |
| GABAergic interneuron | 3 studies | 68% ± 2% | |
| endothelial cell of artery | 3 studies | 22% ± 5% | |
| mononuclear phagocyte | 3 studies | 31% ± 7% | |
| vein endothelial cell | 3 studies | 38% ± 19% | |
| GABAergic amacrine cell | 3 studies | 80% ± 11% | |
| glycinergic amacrine cell | 3 studies | 71% ± 12% | |
| rod bipolar cell | 3 studies | 59% ± 21% | |
| abnormal cell | 3 studies | 24% ± 5% | |
| innate lymphoid cell | 3 studies | 31% ± 14% | |
| ependymal cell | 3 studies | 76% ± 13% | |
| megakaryocyte-erythroid progenitor cell | 3 studies | 49% ± 8% | |
| adventitial cell | 3 studies | 36% ± 16% | |
| capillary endothelial cell | 3 studies | 38% ± 1% | |
| chondrocyte | 3 studies | 46% ± 22% | |
| respiratory goblet cell | 3 studies | 50% ± 21% | |
| group 3 innate lymphoid cell | 3 studies | 33% ± 9% | |
| mucus secreting cell | 3 studies | 37% ± 10% | |
| myoepithelial cell | 3 studies | 54% ± 26% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| ovary | 100% | 3832.46 | 180 / 180 | 99% | 9.03 | 427 / 430 |
| brain | 99% | 2569.72 | 2627 / 2642 | 100% | 15.46 | 704 / 705 |
| thymus | 100% | 2160.71 | 651 / 653 | 100% | 20.56 | 602 / 605 |
| prostate | 100% | 2250.51 | 245 / 245 | 99% | 6.84 | 496 / 502 |
| breast | 100% | 3106.61 | 459 / 459 | 97% | 11.94 | 1082 / 1118 |
| adrenal gland | 95% | 995.81 | 246 / 258 | 96% | 15.07 | 221 / 230 |
| uterus | 100% | 3897.57 | 170 / 170 | 87% | 7.92 | 401 / 459 |
| lung | 99% | 1827.56 | 575 / 578 | 87% | 6.05 | 1010 / 1155 |
| skin | 100% | 2447.92 | 1807 / 1809 | 84% | 6.40 | 396 / 472 |
| kidney | 93% | 1119.61 | 83 / 89 | 86% | 6.46 | 779 / 901 |
| pancreas | 82% | 626.27 | 270 / 328 | 94% | 5.88 | 168 / 178 |
| esophagus | 100% | 3444.73 | 1445 / 1445 | 74% | 4.28 | 135 / 183 |
| bladder | 100% | 2859.90 | 21 / 21 | 63% | 3.61 | 315 / 504 |
| intestine | 99% | 2561.64 | 961 / 966 | 37% | 1.60 | 197 / 527 |
| stomach | 90% | 1718.62 | 322 / 359 | 42% | 2.20 | 121 / 286 |
| adipose | 100% | 2889.22 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 3795.78 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| spleen | 100% | 1297.62 | 241 / 241 | 0% | 0 | 0 / 0 |
| muscle | 99% | 1377.74 | 795 / 803 | 0% | 0 | 0 / 0 |
| heart | 97% | 1608.01 | 831 / 861 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 96% | 8.82 | 43 / 45 |
| eye | 0% | 0 | 0 / 0 | 74% | 3.73 | 59 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 55% | 4.53 | 16 / 29 |
| peripheral blood | 37% | 810.65 | 341 / 929 | 0% | 0 | 0 / 0 |
| liver | 3% | 17.73 | 7 / 226 | 22% | 1.09 | 90 / 406 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0006355 | Biological process | regulation of DNA-templated transcription |
| GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
| GO_0005634 | Cellular component | nucleus |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0003697 | Molecular function | single-stranded DNA binding |
| Gene name | SSBP2 |
| Protein name | Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2) Single stranded DNA binding protein 2 |
| Synonyms | SSDP2 |
| Description | |
| Accessions | ENST00000509013.2 ENST00000512923.5 ENST00000505980.5 [P81877-3] ENST00000615665.5 D6RAC5 ENST00000320672.9 [P81877-1] ENST00000514493.5 [P81877-4] ENST00000504985.5 H0Y9M5 ENST00000509053.5 [P81877-2] ENST00000515395.5 [P81877-5] H0Y9V4 A0A087X159 P81877 |