Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 5228.40 | 653 / 653 | 96% | 137.68 | 579 / 605 |
liver | 98% | 7448.44 | 221 / 226 | 97% | 153.68 | 394 / 406 |
stomach | 97% | 3547.55 | 348 / 359 | 97% | 178.48 | 276 / 286 |
pancreas | 98% | 3661.66 | 323 / 328 | 93% | 175.10 | 165 / 178 |
kidney | 99% | 4293.91 | 88 / 89 | 92% | 152.46 | 830 / 901 |
lung | 100% | 11305.21 | 578 / 578 | 88% | 135.53 | 1011 / 1155 |
ovary | 100% | 22317.88 | 180 / 180 | 86% | 140.24 | 371 / 430 |
intestine | 92% | 4701.99 | 891 / 966 | 93% | 179.73 | 490 / 527 |
breast | 99% | 6337.86 | 453 / 459 | 81% | 317.38 | 911 / 1118 |
prostate | 98% | 3993.19 | 241 / 245 | 75% | 55.75 | 377 / 502 |
adrenal gland | 100% | 55648.60 | 257 / 258 | 73% | 96.33 | 168 / 230 |
uterus | 100% | 10539.90 | 170 / 170 | 55% | 81.93 | 254 / 459 |
bladder | 95% | 4627.29 | 20 / 21 | 59% | 83.72 | 296 / 504 |
esophagus | 82% | 2191.80 | 1185 / 1445 | 71% | 112.72 | 130 / 183 |
spleen | 100% | 22372.48 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 98% | 6474.72 | 1179 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 96% | 5338.28 | 1282 / 1335 | 0% | 0 | 0 / 0 |
muscle | 93% | 3448.45 | 747 / 803 | 0% | 0 | 0 / 0 |
brain | 34% | 518.49 | 908 / 2642 | 54% | 37.12 | 382 / 705 |
heart | 87% | 2410.60 | 749 / 861 | 0% | 0 | 0 / 0 |
skin | 54% | 1339.44 | 982 / 1809 | 32% | 26.54 | 152 / 472 |
peripheral blood | 58% | 3559.55 | 538 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 55% | 49.85 | 16 / 29 |
eye | 0% | 0 | 0 / 0 | 50% | 36.22 | 40 / 80 |
tonsil | 0% | 0 | 0 / 0 | 49% | 40.77 | 22 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006366 | Biological process | transcription by RNA polymerase II |
GO_0034755 | Biological process | iron ion transmembrane transport |
GO_0002260 | Biological process | lymphocyte homeostasis |
GO_0060586 | Biological process | multicellular organismal-level iron ion homeostasis |
GO_0051649 | Biological process | establishment of localization in cell |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0006879 | Biological process | intracellular iron ion homeostasis |
GO_0003158 | Biological process | endothelium development |
GO_0006915 | Biological process | apoptotic process |
GO_0060345 | Biological process | spleen trabecula formation |
GO_1903988 | Biological process | iron ion export across plasma membrane |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0005737 | Cellular component | cytoplasm |
GO_0015093 | Molecular function | ferrous iron transmembrane transporter activity |
GO_0017046 | Molecular function | peptide hormone binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0005381 | Molecular function | iron ion transmembrane transporter activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SLC40A1 |
Protein name | Putative ferroportin 1 variant IIIB Solute carrier family 40 member Putative ferroportin 1 variant IIIA Solute carrier family 40 member 1 Solute carrier family 40 member 1 (Ferroportin-1) (Iron-regulated transporter 1) Ferroportin 1 variant I (Ferroportin 1 variant IIB) (Solute carrier family 40 member 1) Putative ferroportin 1 variant IIIC |
Synonyms | FPN IREG1 SLC11A3 FPN1 MSTP079 |
Description | FUNCTION: Transports Fe(2+) from the inside of a cell to the outside of the cell, playing a key role for maintaining systemic iron homeostasis . Transports iron from intestinal, splenic, hepatic cells, macrophages and erythrocytes into the blood to provide iron to other tissues (By similarity). Controls therefore dietary iron uptake, iron recycling by macrophages and erythrocytes, and release of iron stores in hepatocytes (By similarity). When iron is in excess in serum, circulating HAMP/hepcidin levels increase resulting in a degradation of SLC40A1, thus limiting the iron efflux to plasma . . FUNCTION: May be involved in iron transport and iron homeostasis. . FUNCTION: May be involved in iron transport and iron homeostasis. . FUNCTION: May be involved in iron transport and iron homeostasis. . FUNCTION: May be involved in iron transport and iron homeostasis. . FUNCTION: May be involved in iron transport and iron homeostasis. . |
Accessions | Q4PNE4 ENST00000427241.5 A0A1B1FKG8 A0A1B1FKH1 Q4PNE2 Q4PNE3 E7ES28 ENST00000427419.5 Q9NP59 ENST00000455320.5 ENST00000261024.7 E7EQF8 ENST00000440626.1 D7GLE3 A0A1B1FKG5 Q4PNE6 |