Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 20 studies | 34% ± 15% | |
astrocyte | 17 studies | 39% ± 17% | |
fibroblast | 14 studies | 36% ± 17% | |
oligodendrocyte precursor cell | 12 studies | 41% ± 15% | |
microglial cell | 12 studies | 32% ± 17% | |
glutamatergic neuron | 11 studies | 55% ± 22% | |
GABAergic neuron | 10 studies | 57% ± 24% | |
smooth muscle cell | 10 studies | 35% ± 11% | |
pericyte | 9 studies | 37% ± 15% | |
adipocyte | 9 studies | 41% ± 9% | |
epithelial cell | 7 studies | 34% ± 14% | |
neuron | 6 studies | 45% ± 18% | |
interneuron | 6 studies | 64% ± 21% | |
macrophage | 6 studies | 29% ± 14% | |
mast cell | 6 studies | 28% ± 9% | |
endothelial cell of lymphatic vessel | 6 studies | 42% ± 10% | |
oligodendrocyte | 6 studies | 29% ± 13% | |
cardiac muscle cell | 5 studies | 43% ± 10% | |
T cell | 5 studies | 22% ± 5% | |
basal cell | 5 studies | 45% ± 20% | |
type I pneumocyte | 5 studies | 33% ± 8% | |
type II pneumocyte | 5 studies | 35% ± 8% | |
granule cell | 4 studies | 35% ± 7% | |
mesothelial cell | 4 studies | 38% ± 9% | |
Mueller cell | 4 studies | 40% ± 12% | |
amacrine cell | 4 studies | 45% ± 7% | |
retina horizontal cell | 4 studies | 33% ± 11% | |
retinal cone cell | 4 studies | 47% ± 14% | |
retinal rod cell | 4 studies | 43% ± 10% | |
club cell | 4 studies | 40% ± 12% | |
GABAergic interneuron | 3 studies | 60% ± 4% | |
GABAergic amacrine cell | 3 studies | 51% ± 10% | |
glycinergic amacrine cell | 3 studies | 43% ± 6% | |
retinal ganglion cell | 3 studies | 46% ± 12% | |
endothelial cell of vascular tree | 3 studies | 29% ± 13% | |
cholangiocyte | 3 studies | 61% ± 15% | |
hepatocyte | 3 studies | 61% ± 24% | |
retinal pigment epithelial cell | 3 studies | 49% ± 27% | |
abnormal cell | 3 studies | 33% ± 21% | |
ependymal cell | 3 studies | 40% ± 12% | |
B cell | 3 studies | 25% ± 7% | |
ciliated cell | 3 studies | 30% ± 10% | |
myofibroblast cell | 3 studies | 40% ± 18% | |
respiratory goblet cell | 3 studies | 37% ± 19% | |
lymphocyte | 3 studies | 31% ± 11% | |
transit amplifying cell | 3 studies | 45% ± 30% | |
mucus secreting cell | 3 studies | 36% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 4974.48 | 180 / 180 | 100% | 31.87 | 430 / 430 |
pancreas | 100% | 2957.40 | 328 / 328 | 100% | 28.65 | 178 / 178 |
prostate | 100% | 5942.95 | 245 / 245 | 100% | 61.42 | 502 / 502 |
thymus | 100% | 3716.62 | 653 / 653 | 100% | 37.35 | 605 / 605 |
breast | 100% | 3552.13 | 459 / 459 | 100% | 34.71 | 1117 / 1118 |
kidney | 100% | 3434.85 | 89 / 89 | 100% | 40.58 | 900 / 901 |
intestine | 100% | 5505.55 | 966 / 966 | 100% | 25.39 | 525 / 527 |
skin | 100% | 1940.84 | 1806 / 1809 | 100% | 32.72 | 470 / 472 |
stomach | 100% | 3721.97 | 359 / 359 | 99% | 25.56 | 284 / 286 |
esophagus | 100% | 5069.75 | 1442 / 1445 | 99% | 29.07 | 182 / 183 |
bladder | 100% | 5477.76 | 21 / 21 | 99% | 27.60 | 500 / 504 |
lung | 100% | 3048.15 | 576 / 578 | 99% | 24.10 | 1146 / 1155 |
uterus | 100% | 5762.27 | 170 / 170 | 98% | 25.31 | 449 / 459 |
adrenal gland | 100% | 3096.32 | 258 / 258 | 97% | 23.57 | 223 / 230 |
brain | 96% | 1682.58 | 2528 / 2642 | 100% | 20.30 | 703 / 705 |
liver | 97% | 1316.31 | 219 / 226 | 72% | 10.48 | 294 / 406 |
adipose | 100% | 3171.23 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5527.53 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 38.05 | 80 / 80 |
muscle | 100% | 3128.42 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2112.88 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 17.35 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 18.99 | 1 / 1 |
heart | 98% | 3383.92 | 846 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 86% | 12.61 | 25 / 29 |
peripheral blood | 33% | 743.52 | 311 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0031507 | Biological process | heterochromatin formation |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0042393 | Molecular function | histone binding |
GO_0003682 | Molecular function | chromatin binding |
Gene name | SCMH1 |
Protein name | Scm polycomb group protein homolog 1 (cDNA FLJ60920, highly similar to Polycomb protein SCMH1) Scm polycomb group protein homolog 1 Polycomb protein SCMH1 (Sex comb on midleg homolog 1) |
Synonyms | |
Description | FUNCTION: Associates with Polycomb group (PcG) multiprotein complexes; the complex class is required to maintain the transcriptionally repressive state of some genes. . |
Accessions | A0A8Q3SHR9 ENST00000372595.5 [Q96GD3-3] ENST00000456518.3 [Q96GD3-6] ENST00000695336.1 A0A8Q3SHN2 B4DWE6 ENST00000372596.5 [Q96GD3-5] Q96GD3 A0A087WW29 ENST00000472037.5 ENST00000695337.1 ENST00000372597.5 [Q96GD3-4] ENST00000337495.9 [Q96GD3-2] ENST00000695335.1 ENST00000326197.11 [Q96GD3-1] |