SCAMP3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
CD8-positive, alpha-beta T cell	10 studies	22% ± 6%	Explore
regulatory T cell	9 studies	22% ± 5%	Explore
natural killer cell	8 studies	20% ± 4%	Explore
gamma-delta T cell	7 studies	18% ± 4%	Explore
endothelial cell	6 studies	23% ± 7%	Explore
epithelial cell	6 studies	27% ± 10%	Explore
plasmacytoid dendritic cell	6 studies	24% ± 6%	Explore
memory B cell	6 studies	18% ± 4%	Explore
CD16-positive, CD56-dim natural killer cell, human	5 studies	20% ± 2%	Explore
CD16-negative, CD56-bright natural killer cell, human	5 studies	20% ± 2%	Explore
B cell	5 studies	17% ± 2%	Explore
abnormal cell	5 studies	30% ± 16%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	22% ± 4%	Explore
CD4-positive, alpha-beta T cell	5 studies	22% ± 6%	Explore
plasma cell	4 studies	25% ± 9%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	21% ± 4%	Explore
effector memory CD4-positive, alpha-beta T cell	4 studies	17% ± 3%	Explore
naive B cell	4 studies	18% ± 2%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	21% ± 5%	Explore
mucosal invariant T cell	4 studies	17% ± 2%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	4 studies	19% ± 4%	Explore
plasmablast	3 studies	46% ± 20%	Explore
pancreatic A cell	3 studies	33% ± 13%	Explore
classical monocyte	3 studies	17% ± 2%	Explore
conventional dendritic cell	3 studies	29% ± 9%	Explore
fibroblast	3 studies	21% ± 7%	Explore
effector CD8-positive, alpha-beta T cell	3 studies	23% ± 4%	Explore
exhausted T cell	3 studies	21% ± 4%	Explore
macrophage	3 studies	19% ± 3%	Explore
dendritic cell	3 studies	29% ± 3%	Explore
non-classical monocyte	3 studies	21% ± 3%	Explore
mature NK T cell	3 studies	16% ± 1%	Explore
double negative thymocyte	3 studies	20% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	18% ± 1%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	4 studies	17% ± 1%	Explore
pancreas	3 studies	31% ± 12%	Explore
lung	3 studies	16% ± 1%	Explore
liver	3 studies	18% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	2600.99	1445 / 1445	100%	105.35	183 / 183
liver	100%	2017.39	226 / 226	100%	135.23	406 / 406
ovary	100%	2524.73	180 / 180	100%	141.51	430 / 430
pancreas	100%	2152.48	328 / 328	100%	105.46	178 / 178
brain	100%	2246.09	2637 / 2642	100%	112.66	705 / 705
skin	100%	4068.25	1809 / 1809	100%	226.88	471 / 472
thymus	100%	3112.42	653 / 653	100%	97.21	603 / 605
uterus	100%	2636.19	170 / 170	100%	127.35	457 / 459
intestine	100%	2606.02	966 / 966	99%	99.36	524 / 527
breast	100%	3261.47	459 / 459	99%	163.27	1111 / 1118
lung	100%	3159.51	578 / 578	99%	123.40	1147 / 1155
stomach	100%	2604.36	359 / 359	99%	102.75	284 / 286
prostate	100%	3008.80	245 / 245	99%	128.87	498 / 502
adrenal gland	100%	4822.83	258 / 258	99%	115.54	227 / 230
kidney	100%	3159.58	89 / 89	99%	82.39	889 / 901
bladder	100%	2834.81	21 / 21	98%	120.17	495 / 504
adipose	100%	3233.89	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	163.62	80 / 80
lymph node	0%	0	0 / 0	100%	142.40	29 / 29
muscle	100%	3516.12	803 / 803	0%	0	0 / 0
spleen	100%	3562.94	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	100.06	45 / 45
ureter	0%	0	0 / 0	100%	82.26	1 / 1
blood vessel	100%	2220.52	1333 / 1335	0%	0	0 / 0
heart	99%	2834.64	855 / 861	0%	0	0 / 0
peripheral blood	95%	2095.79	885 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0