Name | Number of supported studies | Average coverage | |
---|---|---|---|
smooth muscle cell | 8 studies | 20% ± 3% | |
endothelial cell | 7 studies | 22% ± 6% | |
pericyte | 6 studies | 19% ± 4% | |
oligodendrocyte precursor cell | 6 studies | 25% ± 9% | |
natural killer cell | 5 studies | 23% ± 6% | |
CD8-positive, alpha-beta T cell | 5 studies | 19% ± 2% | |
regulatory T cell | 5 studies | 16% ± 1% | |
astrocyte | 5 studies | 27% ± 10% | |
oligodendrocyte | 5 studies | 22% ± 6% | |
non-classical monocyte | 4 studies | 23% ± 5% | |
epithelial cell | 4 studies | 21% ± 4% | |
microglial cell | 4 studies | 21% ± 6% | |
macrophage | 4 studies | 19% ± 3% | |
mast cell | 4 studies | 20% ± 4% | |
plasmacytoid dendritic cell | 4 studies | 19% ± 2% | |
interneuron | 4 studies | 35% ± 21% | |
classical monocyte | 3 studies | 21% ± 2% | |
erythroblast | 3 studies | 18% ± 2% | |
lymphocyte | 3 studies | 23% ± 4% | |
fibroblast | 3 studies | 20% ± 1% | |
GABAergic neuron | 3 studies | 38% ± 13% | |
dendritic cell | 3 studies | 20% ± 1% | |
myeloid cell | 3 studies | 25% ± 4% | |
endothelial cell of lymphatic vessel | 3 studies | 21% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 33% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2093.24 | 2639 / 2642 | 25% | 0.48 | 179 / 705 |
esophagus | 100% | 2501.80 | 1445 / 1445 | 21% | 0.30 | 39 / 183 |
stomach | 100% | 1721.78 | 359 / 359 | 5% | 0.19 | 15 / 286 |
intestine | 100% | 2315.78 | 966 / 966 | 4% | 0.09 | 19 / 527 |
lung | 100% | 2324.44 | 577 / 578 | 3% | 0.16 | 37 / 1155 |
bladder | 100% | 2457.67 | 21 / 21 | 2% | 0.14 | 12 / 504 |
ovary | 100% | 2491.20 | 180 / 180 | 2% | 0.02 | 8 / 430 |
breast | 100% | 2503.32 | 459 / 459 | 1% | 0.08 | 16 / 1118 |
kidney | 100% | 2312.63 | 89 / 89 | 1% | 0.04 | 6 / 901 |
prostate | 100% | 2574.78 | 245 / 245 | 1% | 0.02 | 3 / 502 |
uterus | 100% | 2597.61 | 170 / 170 | 0% | 0.03 | 2 / 459 |
pancreas | 100% | 915.90 | 327 / 328 | 1% | 0.06 | 1 / 178 |
adrenal gland | 100% | 2530.53 | 258 / 258 | 0% | 0 | 0 / 230 |
blood vessel | 100% | 2798.00 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2413.71 | 803 / 803 | 0% | 0 | 0 / 0 |
skin | 100% | 2649.12 | 1809 / 1809 | 0% | 0 | 0 / 472 |
spleen | 100% | 2234.16 | 241 / 241 | 0% | 0 | 0 / 0 |
thymus | 100% | 2133.96 | 653 / 653 | 0% | 0 | 0 / 605 |
adipose | 100% | 2423.38 | 1203 / 1204 | 0% | 0 | 0 / 0 |
liver | 100% | 951.55 | 225 / 226 | 0% | 0 | 0 / 406 |
heart | 99% | 2204.04 | 853 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 78% | 1470.71 | 728 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006406 | Biological process | mRNA export from nucleus |
GO_0016973 | Biological process | poly(A)+ mRNA export from nucleus |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0006417 | Biological process | regulation of translation |
GO_0016607 | Cellular component | nuclear speck |
GO_0005654 | Cellular component | nucleoplasm |
GO_0000346 | Cellular component | transcription export complex |
GO_0036464 | Cellular component | cytoplasmic ribonucleoprotein granule |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003682 | Molecular function | chromatin binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | SARNP |
Protein name | SAP domain-containing ribonucleoprotein (Cytokine-induced protein of 29 kDa) (Nuclear protein Hcc-1) (Proliferation-associated cytokine-inducible protein CIP29) SAP domain containing ribonucleoprotein |
Synonyms | HCC1 HSPC316 |
Description | FUNCTION: Binds both single-stranded and double-stranded DNA with higher affinity for the single-stranded form. Specifically binds to scaffold/matrix attachment region DNA. Also binds single-stranded RNA. Enhances RNA unwinding activity of DDX39A. May participate in important transcriptional or translational control of cell growth, metabolism and carcinogenesis. Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cytoplasm via the TAP/NFX1 pathway. The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. . |
Accessions | P82979 ENST00000552884.5 ENST00000546604.5 F8VZQ9 ENST00000336133.8 F8VS12 ENST00000552080.1 |