S100A13 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
fibroblast	39 studies	50% ± 19%	Explore
endothelial cell	36 studies	47% ± 18%	Explore
epithelial cell	19 studies	43% ± 24%	Explore
connective tissue cell	18 studies	50% ± 20%	Explore
endothelial cell of lymphatic vessel	17 studies	50% ± 16%	Explore
smooth muscle cell	16 studies	25% ± 8%	Explore
ciliated cell	16 studies	40% ± 22%	Explore
basal cell	15 studies	36% ± 16%	Explore
capillary endothelial cell	14 studies	40% ± 15%	Explore
pericyte	13 studies	24% ± 9%	Explore
myofibroblast cell	12 studies	50% ± 16%	Explore
endothelial cell of artery	12 studies	47% ± 13%	Explore
vein endothelial cell	12 studies	44% ± 13%	Explore
endothelial cell of vascular tree	11 studies	46% ± 13%	Explore
secretory cell	10 studies	50% ± 17%	Explore
type II pneumocyte	8 studies	35% ± 13%	Explore
astrocyte	8 studies	36% ± 18%	Explore
club cell	7 studies	44% ± 13%	Explore
epithelial cell of proximal tubule	7 studies	32% ± 12%	Explore
abnormal cell	7 studies	39% ± 15%	Explore
respiratory goblet cell	6 studies	44% ± 12%	Explore
kidney loop of Henle epithelial cell	6 studies	44% ± 14%	Explore
goblet cell	6 studies	29% ± 15%	Explore
alveolar macrophage	5 studies	37% ± 12%	Explore
type I pneumocyte	5 studies	30% ± 14%	Explore
macrophage	5 studies	31% ± 12%	Explore
renal alpha-intercalated cell	5 studies	41% ± 10%	Explore
deuterosomal cell	4 studies	31% ± 10%	Explore
glomerular endothelial cell	4 studies	38% ± 6%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	55% ± 11%	Explore
adventitial cell	4 studies	60% ± 6%	Explore
mucus secreting cell	4 studies	35% ± 7%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	54% ± 6%	Explore
duct epithelial cell	3 studies	46% ± 13%	Explore
ionocyte	3 studies	37% ± 8%	Explore
squamous epithelial cell	3 studies	41% ± 27%	Explore
podocyte	3 studies	65% ± 10%	Explore
progenitor cell	3 studies	30% ± 5%	Explore
neural crest cell	3 studies	20% ± 2%	Explore
extravillous trophoblast	3 studies	26% ± 4%	Explore
neuroendocrine cell	3 studies	42% ± 16%	Explore
serous secreting cell	3 studies	27% ± 8%	Explore
Mueller cell	3 studies	39% ± 14%	Explore
neuron	3 studies	32% ± 17%	Explore
enteroendocrine cell	3 studies	44% ± 13%	Explore
melanocyte	3 studies	28% ± 2%	Explore
progenitor cell of mammary luminal epithelium	3 studies	43% ± 6%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	15 studies	30% ± 12%	Explore
intestine	7 studies	28% ± 12%	Explore
kidney	7 studies	30% ± 8%	Explore
uterus	5 studies	46% ± 20%	Explore
breast	4 studies	39% ± 10%	Explore
esophagus	3 studies	28% ± 12%	Explore
prostate	3 studies	26% ± 8%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	3405.79	180 / 180	100%	62.56	429 / 430
thymus	100%	10404.91	653 / 653	99%	77.63	597 / 605
skin	100%	3621.42	1805 / 1809	98%	38.76	461 / 472
uterus	100%	3327.55	170 / 170	97%	30.98	445 / 459
breast	100%	5663.90	459 / 459	95%	29.04	1067 / 1118
bladder	100%	3537.24	21 / 21	91%	22.09	458 / 504
kidney	100%	4781.62	89 / 89	90%	21.22	814 / 901
esophagus	100%	2944.67	1445 / 1445	90%	12.33	164 / 183
lung	100%	4418.26	578 / 578	87%	16.61	1005 / 1155
intestine	100%	4064.26	965 / 966	79%	13.74	415 / 527
stomach	97%	2143.01	347 / 359	70%	10.14	199 / 286
pancreas	71%	970.12	234 / 328	94%	26.66	167 / 178
adrenal gland	100%	3437.38	258 / 258	61%	10.53	141 / 230
brain	99%	4531.42	2628 / 2642	53%	12.00	372 / 705
prostate	100%	3420.33	244 / 245	44%	5.66	220 / 502
liver	67%	846.69	151 / 226	54%	11.38	220 / 406
adipose	100%	6251.03	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	29.81	80 / 80
spleen	100%	3690.54	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	19.93	1 / 1
blood vessel	100%	3493.54	1330 / 1335	0%	0	0 / 0
heart	100%	4253.50	857 / 861	0%	0	0 / 0
muscle	97%	3536.41	776 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	76%	10.41	22 / 29
tonsil	0%	0	0 / 0	73%	12.36	33 / 45
peripheral blood	4%	32.78	33 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0043303	Biological process	mast cell degranulation
GO_0043123	Biological process	positive regulation of canonical NF-kappaB signal transduction
GO_0008284	Biological process	positive regulation of cell population proliferation
GO_0015031	Biological process	protein transport
GO_0001819	Biological process	positive regulation of cytokine production
GO_0032730	Biological process	positive regulation of interleukin-1 alpha production
GO_0005730	Cellular component	nucleolus
GO_0005615	Cellular component	extracellular space
GO_0005576	Cellular component	extracellular region
GO_0005886	Cellular component	plasma membrane
GO_0048471	Cellular component	perinuclear region of cytoplasm
GO_0005654	Cellular component	nucleoplasm
GO_0005829	Cellular component	cytosol
GO_0005737	Cellular component	cytoplasm
GO_0005634	Cellular component	nucleus
GO_0042803	Molecular function	protein homodimerization activity
GO_0008289	Molecular function	lipid binding
GO_0048306	Molecular function	calcium-dependent protein binding
GO_0008270	Molecular function	zinc ion binding
GO_0050786	Molecular function	RAGE receptor binding
GO_0005507	Molecular function	copper ion binding
GO_0005509	Molecular function	calcium ion binding
GO_0017134	Molecular function	fibroblast growth factor binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	S100A13
Protein name	Protein S100-A13 (S100 calcium-binding protein A13)
Synonyms
Description	FUNCTION: Plays a role in the export of proteins that lack a signal peptide and are secreted by an alternative pathway. Binds two calcium ions per subunit. Binds one copper ion. Binding of one copper ion does not interfere with calcium binding. Required for the copper-dependent stress-induced export of IL1A and FGF1. The calcium-free protein binds to lipid vesicles containing phosphatidylserine, but not to vesicles containing phosphatidylcholine (By similarity). .
Accessions	Q99584 ENST00000339556.8 ENST00000392622.3 ENST00000476133.6 ENST00000392623.5 ENST00000440685.7

S100A13 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review