Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 13 studies | 29% ± 13% | |
astrocyte | 11 studies | 33% ± 15% | |
oligodendrocyte | 11 studies | 35% ± 12% | |
oligodendrocyte precursor cell | 10 studies | 33% ± 15% | |
glutamatergic neuron | 9 studies | 44% ± 27% | |
microglial cell | 9 studies | 25% ± 8% | |
GABAergic neuron | 8 studies | 43% ± 22% | |
macrophage | 7 studies | 33% ± 9% | |
adipocyte | 7 studies | 23% ± 7% | |
fibroblast | 7 studies | 27% ± 10% | |
neuron | 6 studies | 36% ± 18% | |
interneuron | 6 studies | 42% ± 26% | |
epithelial cell | 6 studies | 33% ± 16% | |
cardiac muscle cell | 5 studies | 29% ± 7% | |
type I pneumocyte | 5 studies | 24% ± 8% | |
type II pneumocyte | 5 studies | 21% ± 8% | |
granule cell | 4 studies | 22% ± 4% | |
retinal ganglion cell | 4 studies | 29% ± 19% | |
myeloid cell | 4 studies | 19% ± 3% | |
lymphocyte | 4 studies | 26% ± 12% | |
mast cell | 4 studies | 20% ± 3% | |
monocyte | 4 studies | 21% ± 4% | |
natural killer cell | 4 studies | 19% ± 4% | |
basal cell | 4 studies | 31% ± 19% | |
endothelial cell of lymphatic vessel | 4 studies | 26% ± 7% | |
pericyte | 4 studies | 23% ± 9% | |
smooth muscle cell | 4 studies | 22% ± 2% | |
classical monocyte | 3 studies | 18% ± 1% | |
GABAergic interneuron | 3 studies | 27% ± 4% | |
glial cell | 3 studies | 19% ± 3% | |
retinal cone cell | 3 studies | 21% ± 6% | |
ciliated cell | 3 studies | 28% ± 6% | |
retinal bipolar neuron | 3 studies | 17% ± 1% | |
ON-bipolar cell | 3 studies | 22% ± 6% | |
retinal rod cell | 3 studies | 23% ± 1% | |
rod bipolar cell | 3 studies | 24% ± 8% | |
abnormal cell | 3 studies | 26% ± 12% | |
hepatocyte | 3 studies | 26% ± 5% | |
dendritic cell | 3 studies | 22% ± 5% | |
ependymal cell | 3 studies | 31% ± 16% | |
T cell | 3 studies | 18% ± 2% | |
club cell | 3 studies | 25% ± 10% | |
transit amplifying cell | 3 studies | 34% ± 26% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3015.10 | 1445 / 1445 | 100% | 16.51 | 183 / 183 |
lung | 100% | 3273.08 | 578 / 578 | 100% | 14.99 | 1154 / 1155 |
breast | 100% | 4187.73 | 459 / 459 | 100% | 28.40 | 1117 / 1118 |
bladder | 100% | 3776.38 | 21 / 21 | 100% | 11.66 | 503 / 504 |
uterus | 100% | 4001.64 | 170 / 170 | 100% | 15.15 | 458 / 459 |
ovary | 100% | 4559.62 | 180 / 180 | 100% | 16.19 | 429 / 430 |
thymus | 100% | 5386.19 | 653 / 653 | 100% | 26.13 | 603 / 605 |
intestine | 100% | 3748.31 | 966 / 966 | 99% | 10.37 | 524 / 527 |
prostate | 100% | 4466.96 | 244 / 245 | 100% | 19.23 | 501 / 502 |
brain | 99% | 2751.94 | 2625 / 2642 | 100% | 18.99 | 705 / 705 |
kidney | 100% | 2637.16 | 89 / 89 | 99% | 14.87 | 888 / 901 |
pancreas | 99% | 2252.38 | 326 / 328 | 99% | 12.99 | 176 / 178 |
adrenal gland | 100% | 2905.23 | 258 / 258 | 98% | 14.07 | 225 / 230 |
stomach | 100% | 2669.75 | 359 / 359 | 98% | 11.88 | 279 / 286 |
skin | 100% | 3545.23 | 1809 / 1809 | 96% | 13.88 | 455 / 472 |
liver | 99% | 1735.98 | 224 / 226 | 93% | 8.92 | 376 / 406 |
adipose | 100% | 3333.33 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 10.30 | 29 / 29 |
muscle | 100% | 5803.82 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4016.28 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.91 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.48 | 1 / 1 |
blood vessel | 100% | 3392.13 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 2338.68 | 830 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 93% | 1786.54 | 867 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 83% | 8.18 | 66 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0000118 | Cellular component | histone deacetylase complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005667 | Cellular component | transcription regulator complex |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | RCOR3 |
Protein name | REST corepressor 3 |
Synonyms | KIAA1343 |
Description | FUNCTION: May act as a component of a corepressor complex that represses transcription. . |
Accessions | H0YF22 E9PPC5 E9PR63 ENST00000534478.5 ENST00000367006.8 [Q9P2K3-2] ENST00000533469.5 H0YDD7 ENST00000528926.5 E9PQE5 ENST00000529763.5 B4DV59 ENST00000485186.1 ENST00000367005.8 [Q9P2K3-1] ENST00000534460.5 ENST00000452621.6 [Q9P2K3-4] ENST00000419091.7 [Q9P2K3-3] Q9P2K3 H0YDR8 ENST00000529572.5 |