Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 5477.55 | 1445 / 1445 | 100% | 31.20 | 183 / 183 |
ovary | 100% | 5479.86 | 180 / 180 | 100% | 28.43 | 430 / 430 |
skin | 100% | 6988.09 | 1809 / 1809 | 100% | 27.34 | 472 / 472 |
prostate | 100% | 6642.65 | 245 / 245 | 100% | 27.31 | 500 / 502 |
uterus | 100% | 5253.47 | 170 / 170 | 100% | 30.29 | 457 / 459 |
liver | 100% | 3001.67 | 225 / 226 | 100% | 19.06 | 405 / 406 |
intestine | 100% | 5228.71 | 966 / 966 | 99% | 20.35 | 523 / 527 |
lung | 100% | 6165.75 | 578 / 578 | 99% | 20.21 | 1146 / 1155 |
kidney | 100% | 6657.98 | 89 / 89 | 99% | 21.47 | 893 / 901 |
thymus | 100% | 6200.35 | 653 / 653 | 99% | 22.62 | 596 / 605 |
pancreas | 100% | 3231.99 | 328 / 328 | 98% | 24.07 | 175 / 178 |
stomach | 100% | 4896.55 | 359 / 359 | 98% | 21.71 | 281 / 286 |
adrenal gland | 100% | 6472.00 | 258 / 258 | 98% | 15.56 | 225 / 230 |
bladder | 100% | 6239.90 | 21 / 21 | 98% | 23.15 | 492 / 504 |
breast | 100% | 6438.02 | 459 / 459 | 98% | 24.75 | 1091 / 1118 |
brain | 84% | 1809.99 | 2227 / 2642 | 97% | 20.53 | 683 / 705 |
adipose | 100% | 7045.29 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 5004.94 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 19.27 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 36.62 | 1 / 1 |
blood vessel | 100% | 6090.83 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 2899.70 | 850 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 14.98 | 78 / 80 |
lymph node | 0% | 0 | 0 / 0 | 86% | 14.41 | 25 / 29 |
muscle | 77% | 1206.42 | 621 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 36% | 754.73 | 332 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0072659 | Biological process | protein localization to plasma membrane |
GO_0032869 | Biological process | cellular response to insulin stimulus |
GO_0031175 | Biological process | neuron projection development |
GO_0010737 | Biological process | protein kinase A signaling |
GO_0097368 | Biological process | establishment of Sertoli cell barrier |
GO_0032456 | Biological process | endocytic recycling |
GO_0009306 | Biological process | protein secretion |
GO_0035767 | Biological process | endothelial cell chemotaxis |
GO_0016197 | Biological process | endosomal transport |
GO_0006887 | Biological process | exocytosis |
GO_0070830 | Biological process | bicellular tight junction assembly |
GO_1902463 | Biological process | protein localization to cell leading edge |
GO_0006893 | Biological process | Golgi to plasma membrane transport |
GO_0044795 | Biological process | trans-Golgi network to recycling endosome transport |
GO_0030866 | Biological process | cortical actin cytoskeleton organization |
GO_0005886 | Cellular component | plasma membrane |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0030139 | Cellular component | endocytic vesicle |
GO_0055037 | Cellular component | recycling endosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0043005 | Cellular component | neuron projection |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0005829 | Cellular component | cytosol |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0032593 | Cellular component | insulin-responsive compartment |
GO_0030140 | Cellular component | trans-Golgi network transport vesicle |
GO_0016328 | Cellular component | lateral plasma membrane |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0030054 | Cellular component | cell junction |
GO_0005768 | Cellular component | endosome |
GO_0030027 | Cellular component | lamellipodium |
GO_0005525 | Molecular function | GTP binding |
GO_0005515 | Molecular function | protein binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | RAB13 |
Protein name | RAB13, member RAS oncogene family Ras-related protein Rab-13 Ras-related protein Rab-13 (Cell growth-inhibiting gene 4 protein) |
Synonyms | GIG4 |
Description | FUNCTION: The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different sets of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. That Rab is involved in endocytic recycling and regulates the transport to the plasma membrane of transmembrane proteins like the tight junction protein OCLN/occludin. Thereby, it regulates the assembly and the activity of tight junctions. Moreover, it may also regulate tight junction assembly by activating the PKA signaling pathway and by reorganizing the actin cytoskeleton through the activation of the downstream effectors PRKACA and MICALL2 respectively. Through its role in tight junction assembly, may play a role in the establishment of Sertoli cell barrier. Plays also a role in angiogenesis through regulation of endothelial cells chemotaxis. Also involved in neurite outgrowth. Has also been proposed to play a role in post-Golgi membrane trafficking from the TGN to the recycling endosome. Finally, it has been involved in insulin-induced transport to the plasma membrane of the glucose transporter GLUT4 and therefore may play a role in glucose homeostasis. . |
Accessions | ENST00000614713.4 P51153 Q504R6 ENST00000368575.5 A0A087WWB9 |