PRELID3B report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
CD4-positive, alpha-beta T cell	11 studies	21% ± 7%	Explore
CD8-positive, alpha-beta T cell	11 studies	20% ± 5%	Explore
B cell	9 studies	20% ± 4%	Explore
epithelial cell	9 studies	35% ± 18%	Explore
regulatory T cell	8 studies	20% ± 4%	Explore
mucosal invariant T cell	7 studies	19% ± 4%	Explore
natural killer cell	7 studies	21% ± 4%	Explore
CD16-positive, CD56-dim natural killer cell, human	6 studies	18% ± 2%	Explore
memory B cell	6 studies	18% ± 2%	Explore
CD16-negative, CD56-bright natural killer cell, human	5 studies	18% ± 1%	Explore
effector memory CD8-positive, alpha-beta T cell	5 studies	20% ± 5%	Explore
naive B cell	5 studies	19% ± 2%	Explore
CD8-positive, alpha-beta memory T cell	5 studies	22% ± 5%	Explore
gamma-delta T cell	5 studies	27% ± 15%	Explore
CD4-positive, alpha-beta memory T cell	5 studies	20% ± 3%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	4 studies	17% ± 0%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	4 studies	19% ± 2%	Explore
precursor B cell	4 studies	22% ± 2%	Explore
enterocyte	4 studies	21% ± 4%	Explore
endothelial cell	4 studies	20% ± 4%	Explore
ciliated cell	4 studies	29% ± 7%	Explore
effector CD8-positive, alpha-beta T cell	4 studies	16% ± 1%	Explore
abnormal cell	4 studies	21% ± 8%	Explore
T cell	4 studies	18% ± 2%	Explore
conventional dendritic cell	3 studies	30% ± 6%	Explore
exhausted T cell	3 studies	21% ± 4%	Explore
non-classical monocyte	3 studies	23% ± 7%	Explore
myeloid cell	3 studies	22% ± 3%	Explore
effector CD4-positive, alpha-beta T cell	3 studies	19% ± 3%	Explore
intestinal crypt stem cell	3 studies	25% ± 7%	Explore
plasmacytoid dendritic cell	3 studies	21% ± 3%	Explore
double negative thymocyte	3 studies	27% ± 11%	Explore
basal cell	3 studies	27% ± 8%	Explore
secretory cell	3 studies	29% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	5 studies	22% ± 5%	Explore
lung	3 studies	24% ± 6%	Explore
intestine	3 studies	19% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	2555.98	1445 / 1445	100%	132.77	183 / 183
intestine	100%	3332.55	966 / 966	100%	207.01	527 / 527
ovary	100%	1399.22	180 / 180	100%	114.22	430 / 430
stomach	100%	1825.12	359 / 359	100%	198.31	286 / 286
breast	100%	2446.02	459 / 459	100%	130.76	1117 / 1118
lung	100%	2353.60	577 / 578	100%	124.39	1155 / 1155
uterus	100%	1421.07	170 / 170	100%	107.85	458 / 459
bladder	100%	1967.43	21 / 21	100%	143.11	502 / 504
thymus	100%	2352.41	653 / 653	99%	69.57	599 / 605
pancreas	99%	1225.55	326 / 328	99%	93.28	176 / 178
prostate	100%	1600.64	244 / 245	98%	77.93	494 / 502
brain	100%	1612.05	2637 / 2642	98%	69.95	692 / 705
kidney	100%	2048.52	89 / 89	96%	59.19	867 / 901
adrenal gland	100%	2725.15	258 / 258	94%	55.99	217 / 230
skin	100%	2737.58	1808 / 1809	94%	86.61	444 / 472
liver	100%	1375.98	226 / 226	89%	42.05	362 / 406
adipose	100%	2417.80	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	84.24	29 / 29
spleen	100%	1929.62	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	93.65	45 / 45
ureter	0%	0	0 / 0	100%	44.28	1 / 1
blood vessel	100%	1664.27	1334 / 1335	0%	0	0 / 0
muscle	99%	1385.09	798 / 803	0%	0	0 / 0
heart	97%	1466.38	834 / 861	0%	0	0 / 0
peripheral blood	85%	1922.81	790 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	65%	31.90	52 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0