Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 47 studies | 53% ± 19% | |
pericyte | 28 studies | 42% ± 20% | |
endothelial cell | 25 studies | 33% ± 10% | |
smooth muscle cell | 25 studies | 34% ± 14% | |
macrophage | 24 studies | 29% ± 11% | |
endothelial cell of lymphatic vessel | 20 studies | 38% ± 13% | |
mast cell | 17 studies | 27% ± 8% | |
connective tissue cell | 16 studies | 51% ± 17% | |
astrocyte | 16 studies | 30% ± 10% | |
oligodendrocyte | 16 studies | 42% ± 17% | |
myofibroblast cell | 13 studies | 52% ± 19% | |
endothelial cell of vascular tree | 12 studies | 39% ± 16% | |
capillary endothelial cell | 9 studies | 27% ± 10% | |
mesothelial cell | 9 studies | 50% ± 27% | |
vein endothelial cell | 9 studies | 31% ± 10% | |
adipocyte | 8 studies | 28% ± 16% | |
myeloid cell | 8 studies | 27% ± 11% | |
endothelial cell of artery | 7 studies | 29% ± 10% | |
enterocyte | 6 studies | 32% ± 15% | |
glial cell | 6 studies | 65% ± 19% | |
cardiac muscle cell | 6 studies | 22% ± 5% | |
adventitial cell | 5 studies | 67% ± 22% | |
oligodendrocyte precursor cell | 5 studies | 25% ± 6% | |
melanocyte | 5 studies | 54% ± 24% | |
alveolar macrophage | 4 studies | 22% ± 3% | |
Schwann cell | 4 studies | 65% ± 9% | |
mononuclear phagocyte | 4 studies | 24% ± 7% | |
chondrocyte | 4 studies | 40% ± 26% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 18% ± 1% | |
neuron | 4 studies | 36% ± 7% | |
abnormal cell | 3 studies | 34% ± 13% | |
tissue-resident macrophage | 3 studies | 31% ± 8% | |
Mueller cell | 3 studies | 19% ± 3% | |
myoepithelial cell | 3 studies | 44% ± 19% | |
granulocyte | 3 studies | 29% ± 8% | |
muscle cell | 3 studies | 20% ± 2% | |
type I pneumocyte | 3 studies | 20% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
skin | 98% | 8625.26 | 1781 / 1809 | 99% | 66.94 | 469 / 472 |
breast | 100% | 15473.40 | 459 / 459 | 98% | 46.13 | 1092 / 1118 |
lung | 100% | 17001.33 | 577 / 578 | 91% | 19.07 | 1056 / 1155 |
thymus | 99% | 8385.01 | 649 / 653 | 89% | 21.74 | 538 / 605 |
brain | 79% | 5587.68 | 2074 / 2642 | 100% | 45.46 | 702 / 705 |
intestine | 99% | 13383.84 | 955 / 966 | 78% | 14.19 | 411 / 527 |
bladder | 100% | 12794.00 | 21 / 21 | 73% | 14.77 | 368 / 504 |
esophagus | 85% | 10813.86 | 1235 / 1445 | 78% | 13.44 | 143 / 183 |
prostate | 96% | 6843.95 | 234 / 245 | 64% | 7.60 | 321 / 502 |
uterus | 99% | 12406.02 | 169 / 170 | 59% | 14.15 | 271 / 459 |
ovary | 100% | 8003.76 | 180 / 180 | 56% | 7.84 | 239 / 430 |
adrenal gland | 79% | 3208.71 | 204 / 258 | 76% | 13.69 | 174 / 230 |
stomach | 68% | 6192.06 | 245 / 359 | 81% | 15.78 | 231 / 286 |
kidney | 47% | 1831.96 | 42 / 89 | 82% | 20.02 | 741 / 901 |
pancreas | 6% | 179.48 | 20 / 328 | 94% | 30.90 | 168 / 178 |
adipose | 100% | 19230.49 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 10877.91 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 8698.18 | 846 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 31.50 | 78 / 80 |
muscle | 95% | 11405.20 | 764 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 58% | 7.24 | 26 / 45 |
spleen | 43% | 1411.37 | 103 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 31% | 2.85 | 9 / 29 |
liver | 1% | 27.77 | 2 / 226 | 18% | 2.24 | 75 / 406 |
peripheral blood | 0% | 11.10 | 3 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006915 | Biological process | apoptotic process |
GO_0032060 | Biological process | bleb assembly |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0010977 | Biological process | negative regulation of neuron projection development |
GO_0032288 | Biological process | myelin assembly |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0030154 | Biological process | cell differentiation |
GO_0007422 | Biological process | peripheral nervous system development |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0043218 | Cellular component | compact myelin |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0005515 | Molecular function | protein binding |
Gene name | PMP22 |
Protein name | Peripheral myelin protein 22 (PMP-22) (Growth arrest-specific protein 3) (GAS-3) Peripheral myelin protein 22 |
Synonyms | GAS3 |
Description | FUNCTION: Might be involved in growth regulation, and in myelinization in the peripheral nervous system. FUNCTION: Might be involved in growth regulation, and in myelinization in the peripheral nervous system. . FUNCTION: Might be involved in growth regulation, and in myelinization in the peripheral nervous system. . FUNCTION: Might be involved in growth regulation, and in myelinization in the peripheral nervous system. . FUNCTION: Might be involved in growth regulation, and in myelinization in the peripheral nervous system. . FUNCTION: Might be involved in growth regulation, and in myelinization in the peripheral nervous system. . |
Accessions | J3KT36 ENST00000676221.1 A0A6Q8PFD5 ENST00000675819.1 ENST00000676161.1 Q6FH25 ENST00000644020.1 ENST00000675950.1 ENST00000494511.7 A0A2R8Y5L5 ENST00000612492.5 ENST00000675854.1 ENST00000674947.1 ENST00000675551.1 ENST00000395938.7 ENST00000674707.1 ENST00000674673.1 ENST00000395936.7 A8MU75 ENST00000676329.1 A0A6Q8PFS0 ENST00000675808.1 ENST00000312280.9 A0A6Q8PF92 J3KQW0 A0A6Q8PF08 Q01453 ENST00000580584.3 ENST00000674868.1 ENST00000675350.1 ENST00000426385.4 ENST00000674651.1 ENST00000643451.2 ENST00000646419.2 |