Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 38 studies | 42% ± 18% | |
oligodendrocyte | 15 studies | 65% ± 12% | |
oligodendrocyte precursor cell | 14 studies | 49% ± 18% | |
glutamatergic neuron | 12 studies | 60% ± 23% | |
astrocyte | 11 studies | 27% ± 14% | |
vein endothelial cell | 11 studies | 39% ± 24% | |
GABAergic neuron | 10 studies | 53% ± 26% | |
epithelial cell | 10 studies | 35% ± 19% | |
fibroblast | 10 studies | 26% ± 7% | |
capillary endothelial cell | 9 studies | 27% ± 14% | |
smooth muscle cell | 8 studies | 26% ± 9% | |
pericyte | 7 studies | 29% ± 11% | |
ciliated cell | 7 studies | 30% ± 15% | |
basal cell | 7 studies | 43% ± 21% | |
endothelial cell of lymphatic vessel | 7 studies | 42% ± 9% | |
neuron | 6 studies | 41% ± 18% | |
interneuron | 6 studies | 61% ± 22% | |
club cell | 6 studies | 34% ± 17% | |
retinal cone cell | 6 studies | 40% ± 21% | |
adipocyte | 6 studies | 19% ± 2% | |
endothelial cell of vascular tree | 6 studies | 38% ± 24% | |
microglial cell | 5 studies | 44% ± 13% | |
kidney loop of Henle epithelial cell | 5 studies | 53% ± 27% | |
cardiac muscle cell | 5 studies | 22% ± 5% | |
respiratory goblet cell | 5 studies | 41% ± 21% | |
type I pneumocyte | 5 studies | 37% ± 7% | |
type II pneumocyte | 5 studies | 28% ± 6% | |
endothelial cell of artery | 4 studies | 26% ± 6% | |
granule cell | 4 studies | 49% ± 19% | |
retinal pigment epithelial cell | 4 studies | 46% ± 19% | |
retinal rod cell | 4 studies | 37% ± 20% | |
ionocyte | 3 studies | 24% ± 4% | |
cholangiocyte | 3 studies | 45% ± 19% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 72% ± 16% | |
GABAergic interneuron | 3 studies | 50% ± 12% | |
macrophage | 3 studies | 33% ± 14% | |
retinal bipolar neuron | 3 studies | 31% ± 13% | |
OFF-bipolar cell | 3 studies | 39% ± 18% | |
ON-bipolar cell | 3 studies | 40% ± 16% | |
amacrine cell | 3 studies | 27% ± 8% | |
glycinergic amacrine cell | 3 studies | 32% ± 13% | |
rod bipolar cell | 3 studies | 44% ± 19% | |
hepatocyte | 3 studies | 57% ± 16% | |
ependymal cell | 3 studies | 29% ± 14% | |
monocyte | 3 studies | 17% ± 2% | |
goblet cell | 3 studies | 45% ± 33% | |
transit amplifying cell | 3 studies | 46% ± 31% | |
mesothelial cell | 3 studies | 32% ± 4% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 65% ± 24% | |
mucus secreting cell | 3 studies | 53% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 3462.41 | 180 / 180 | 100% | 36.02 | 429 / 430 |
breast | 100% | 6777.34 | 459 / 459 | 100% | 49.24 | 1114 / 1118 |
brain | 100% | 21479.38 | 2642 / 2642 | 100% | 39.34 | 702 / 705 |
uterus | 100% | 4798.15 | 170 / 170 | 100% | 31.89 | 457 / 459 |
thymus | 100% | 8007.94 | 653 / 653 | 100% | 62.78 | 602 / 605 |
intestine | 100% | 3596.86 | 966 / 966 | 99% | 32.76 | 524 / 527 |
prostate | 100% | 5257.82 | 245 / 245 | 99% | 27.73 | 499 / 502 |
esophagus | 100% | 6387.06 | 1445 / 1445 | 99% | 38.79 | 181 / 183 |
bladder | 100% | 4462.33 | 21 / 21 | 99% | 24.92 | 497 / 504 |
kidney | 100% | 9789.67 | 89 / 89 | 98% | 52.60 | 887 / 901 |
lung | 99% | 4365.60 | 573 / 578 | 99% | 31.99 | 1147 / 1155 |
stomach | 99% | 3092.96 | 357 / 359 | 99% | 38.18 | 282 / 286 |
skin | 100% | 4586.30 | 1801 / 1809 | 96% | 22.80 | 452 / 472 |
pancreas | 93% | 2228.10 | 306 / 328 | 99% | 31.15 | 177 / 178 |
liver | 94% | 2122.88 | 213 / 226 | 94% | 19.22 | 382 / 406 |
adrenal gland | 92% | 1909.74 | 237 / 258 | 82% | 14.79 | 188 / 230 |
adipose | 100% | 5380.25 | 1204 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 31.83 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 14.86 | 1 / 1 |
blood vessel | 99% | 3226.77 | 1315 / 1335 | 0% | 0 | 0 / 0 |
heart | 94% | 3026.27 | 812 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 12.48 | 68 / 80 |
spleen | 73% | 1333.68 | 175 / 241 | 0% | 0 | 0 / 0 |
muscle | 67% | 1319.48 | 534 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 31% | 3.24 | 9 / 29 |
peripheral blood | 21% | 621.62 | 199 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007043 | Biological process | cell-cell junction assembly |
GO_0043547 | Biological process | positive regulation of GTPase activity |
GO_0007267 | Biological process | cell-cell signaling |
GO_0030155 | Biological process | regulation of cell adhesion |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0032467 | Biological process | positive regulation of cytokinesis |
GO_0030496 | Cellular component | midbody |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005886 | Cellular component | plasma membrane |
GO_0000922 | Cellular component | spindle pole |
GO_0072686 | Cellular component | mitotic spindle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0009898 | Cellular component | cytoplasmic side of plasma membrane |
GO_0044291 | Cellular component | cell-cell contact zone |
GO_0001533 | Cellular component | cornified envelope |
GO_0005911 | Cellular component | cell-cell junction |
GO_0051233 | Cellular component | spindle midzone |
GO_0005912 | Cellular component | adherens junction |
GO_0014069 | Cellular component | postsynaptic density |
GO_0005737 | Cellular component | cytoplasm |
GO_0030054 | Cellular component | cell junction |
GO_0030057 | Cellular component | desmosome |
GO_0005634 | Cellular component | nucleus |
GO_0045296 | Molecular function | cadherin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | PKP4 |
Protein name | Uncharacterized protein PKP4 Plakophilin 4 Plakophilin-4 (p0071) |
Synonyms | |
Description | FUNCTION: Plays a role as a regulator of Rho activity during cytokinesis. May play a role in junctional plaques. . |
Accessions | ENST00000389759.8 [Q99569-1] E7EMY7 ENST00000389757.7 [Q99569-2] Q99569 ENST00000421462.5 ENST00000457109.5 H0YFB1 Q4W5T8 ENST00000629219.1 ENST00000426248.7 ENST00000452162.5 ENST00000411900.5 ENST00000481115.2 Q53TM5 E7EP40 E9PHJ1 E7EST6 |