Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4182.13 | 1445 / 1445 | 100% | 45.62 | 183 / 183 |
intestine | 100% | 3037.90 | 966 / 966 | 100% | 25.89 | 527 / 527 |
ovary | 100% | 2769.73 | 180 / 180 | 100% | 47.93 | 430 / 430 |
prostate | 100% | 3180.55 | 245 / 245 | 100% | 30.25 | 502 / 502 |
bladder | 100% | 2468.90 | 21 / 21 | 100% | 24.11 | 503 / 504 |
stomach | 100% | 2247.56 | 359 / 359 | 100% | 29.58 | 285 / 286 |
breast | 100% | 2845.05 | 459 / 459 | 100% | 31.97 | 1114 / 1118 |
skin | 100% | 3860.41 | 1809 / 1809 | 100% | 26.88 | 470 / 472 |
lung | 100% | 2781.36 | 577 / 578 | 100% | 27.67 | 1152 / 1155 |
uterus | 100% | 3550.05 | 170 / 170 | 100% | 32.04 | 457 / 459 |
brain | 99% | 1489.30 | 2627 / 2642 | 100% | 22.45 | 704 / 705 |
thymus | 100% | 3224.66 | 653 / 653 | 99% | 23.04 | 599 / 605 |
pancreas | 99% | 1702.72 | 326 / 328 | 99% | 20.88 | 176 / 178 |
kidney | 100% | 3309.66 | 89 / 89 | 98% | 25.10 | 884 / 901 |
liver | 100% | 2334.76 | 226 / 226 | 95% | 15.68 | 385 / 406 |
adrenal gland | 100% | 2492.73 | 258 / 258 | 91% | 11.44 | 210 / 230 |
adipose | 100% | 2518.16 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2481.00 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2080.50 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3182.68 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 33.67 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.43 | 1 / 1 |
heart | 99% | 1637.91 | 856 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 12.39 | 74 / 80 |
lymph node | 0% | 0 | 0 / 0 | 90% | 11.75 | 26 / 29 |
peripheral blood | 73% | 1150.68 | 678 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0061386 | Biological process | closure of optic fissure |
GO_0007266 | Biological process | Rho protein signal transduction |
GO_2001045 | Biological process | negative regulation of integrin-mediated signaling pathway |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0001843 | Biological process | neural tube closure |
GO_0001755 | Biological process | neural crest cell migration |
GO_0043085 | Biological process | positive regulation of catalytic activity |
GO_0051726 | Biological process | regulation of cell cycle |
GO_0048484 | Biological process | enteric nervous system development |
GO_0030027 | Cellular component | lamellipodium |
GO_0005737 | Cellular component | cytoplasm |
GO_0072542 | Molecular function | protein phosphatase activator activity |
GO_0008157 | Molecular function | protein phosphatase 1 binding |
GO_0003779 | Molecular function | actin binding |
Gene name | PHACTR4 |
Protein name | Phosphatase and actin regulator 4 |
Synonyms | PRO2963 |
Description | FUNCTION: Regulator of protein phosphatase 1 (PP1) required for neural tube and optic fissure closure, and enteric neural crest cell (ENCCs) migration during development. Acts as an activator of PP1 by interacting with PPP1CA and preventing phosphorylation of PPP1CA at 'Thr-320'. During neural tube closure, localizes to the ventral neural tube and activates PP1, leading to down-regulate cell proliferation within cranial neural tissue and the neural retina. Also acts as a regulator of migration of enteric neural crest cells (ENCCs) by activating PP1, leading to dephosphorylation and subsequent activation of cofilin (COF1 or COF2) and repression of the integrin signaling through the RHO/ROCK pathway (By similarity). . FUNCTION: Regulator of protein phosphatase 1 (PP1) required for neural tube and optic fissure closure, and enteric neural crest cell (ENCCs) migration during development. Acts as an activator of PP1. During neural tube closure, localizes to the ventral neural tube and activates PP1, leading to down-regulate cell proliferation within cranial neural tissue and the neural retina. Also acts as a regulator of migration of enteric neural crest cells (ENCCs) by activating PP1, leading to repression of the integrin signaling through the rho/rock pathway. . FUNCTION: Regulator of protein phosphatase 1 (PP1) required for neural tube and optic fissure closure, and enteric neural crest cell (ENCCs) migration during development. Acts as an activator of PP1. During neural tube closure, localizes to the ventral neural tube and activates PP1, leading to down-regulate cell proliferation within cranial neural tissue and the neural retina. Also acts as a regulator of migration of enteric neural crest cells (ENCCs) by activating PP1, leading to repression of the integrin signaling through the rho/rock pathway. . |
Accessions | ENST00000373836.4 [Q8IZ21-2] Q8IZ21 A0A0J9YVR0 A0A0J9YY52 ENST00000632421.1 A0A0J9YWV8 ENST00000493669.2 [Q8IZ21-4] ENST00000632202.1 ENST00000373839.8 [Q8IZ21-1] ENST00000633167.1 |