PDXDC1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	18 studies	33% ± 14%	Explore
fibroblast	17 studies	36% ± 15%	Explore
macrophage	13 studies	28% ± 11%	Explore
epithelial cell	12 studies	37% ± 21%	Explore
ciliated cell	10 studies	34% ± 14%	Explore
astrocyte	10 studies	38% ± 19%	Explore
basal cell	9 studies	36% ± 17%	Explore
adipocyte	9 studies	46% ± 14%	Explore
goblet cell	8 studies	44% ± 21%	Explore
mast cell	8 studies	28% ± 7%	Explore
smooth muscle cell	8 studies	32% ± 10%	Explore
endothelial cell of lymphatic vessel	8 studies	42% ± 12%	Explore
club cell	7 studies	31% ± 15%	Explore
glutamatergic neuron	7 studies	56% ± 21%	Explore
oligodendrocyte	7 studies	37% ± 12%	Explore
microglial cell	7 studies	33% ± 12%	Explore
pericyte	7 studies	29% ± 10%	Explore
T cell	7 studies	25% ± 8%	Explore
natural killer cell	6 studies	21% ± 4%	Explore
neuron	6 studies	41% ± 25%	Explore
GABAergic neuron	6 studies	52% ± 19%	Explore
oligodendrocyte precursor cell	6 studies	41% ± 21%	Explore
B cell	6 studies	22% ± 8%	Explore
dendritic cell	6 studies	24% ± 8%	Explore
type I pneumocyte	6 studies	36% ± 9%	Explore
type II pneumocyte	6 studies	35% ± 7%	Explore
respiratory goblet cell	5 studies	43% ± 13%	Explore
transit amplifying cell	5 studies	31% ± 26%	Explore
interneuron	5 studies	57% ± 27%	Explore
retinal ganglion cell	5 studies	22% ± 5%	Explore
myeloid cell	5 studies	31% ± 8%	Explore
mucus secreting cell	5 studies	37% ± 13%	Explore
cardiac muscle cell	5 studies	37% ± 11%	Explore
hepatocyte	5 studies	53% ± 24%	Explore
naive B cell	5 studies	17% ± 1%	Explore
CD16-positive, CD56-dim natural killer cell, human	4 studies	21% ± 5%	Explore
plasma cell	4 studies	40% ± 12%	Explore
retina horizontal cell	4 studies	26% ± 8%	Explore
retinal pigment epithelial cell	4 studies	38% ± 30%	Explore
CD16-negative, CD56-bright natural killer cell, human	4 studies	20% ± 5%	Explore
mesothelial cell	4 studies	26% ± 6%	Explore
mucosal invariant T cell	4 studies	20% ± 5%	Explore
vein endothelial cell	4 studies	28% ± 19%	Explore
lymphocyte	4 studies	26% ± 11%	Explore
abnormal cell	4 studies	28% ± 21%	Explore
muscle cell	4 studies	46% ± 27%	Explore
brush cell	4 studies	30% ± 6%	Explore
CD4-positive, alpha-beta memory T cell	3 studies	16% ± 1%	Explore
ionocyte	3 studies	24% ± 4%	Explore
secretory cell	3 studies	30% ± 6%	Explore
pancreatic A cell	3 studies	42% ± 19%	Explore
hematopoietic precursor cell	3 studies	20% ± 4%	Explore
plasmablast	3 studies	27% ± 10%	Explore
squamous epithelial cell	3 studies	41% ± 23%	Explore
CD8-positive, alpha-beta T cell	3 studies	19% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	24% ± 6%	Explore
mononuclear phagocyte	3 studies	25% ± 7%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	3 studies	22% ± 4%	Explore
retinal cone cell	3 studies	17% ± 0%	Explore
Mueller cell	3 studies	28% ± 5%	Explore
amacrine cell	3 studies	34% ± 7%	Explore
retinal rod cell	3 studies	24% ± 1%	Explore
endothelial cell of vascular tree	3 studies	48% ± 7%	Explore
connective tissue cell	3 studies	24% ± 6%	Explore
enteroendocrine cell	3 studies	36% ± 7%	Explore
alveolar macrophage	3 studies	43% ± 9%	Explore
myofibroblast cell	3 studies	44% ± 17%	Explore
gamma-delta T cell	3 studies	18% ± 1%	Explore
granule cell	3 studies	39% ± 18%	Explore
CD8-positive, alpha-beta memory T cell	3 studies	19% ± 2%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	10 studies	43% ± 20%	Explore
lung	8 studies	29% ± 9%	Explore
heart	5 studies	32% ± 11%	Explore
eye	4 studies	38% ± 23%	Explore
peripheral blood	3 studies	19% ± 3%	Explore
liver	3 studies	41% ± 19%	Explore
intestine	3 studies	19% ± 4%	Explore
adipose	3 studies	38% ± 16%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	6661.20	459 / 459	100%	97.14	1118 / 1118
esophagus	100%	6250.91	1445 / 1445	100%	50.50	183 / 183
prostate	100%	9911.69	245 / 245	100%	107.64	502 / 502
stomach	100%	7605.44	359 / 359	100%	60.95	286 / 286
intestine	100%	8865.72	966 / 966	100%	67.71	526 / 527
lung	100%	6579.97	578 / 578	100%	51.31	1152 / 1155
skin	100%	5725.82	1809 / 1809	99%	48.19	468 / 472
ovary	100%	5101.33	180 / 180	99%	44.13	426 / 430
bladder	100%	6481.14	21 / 21	99%	49.50	499 / 504
pancreas	100%	6749.83	328 / 328	99%	56.75	176 / 178
kidney	100%	7100.30	89 / 89	98%	41.82	885 / 901
thymus	100%	7938.97	653 / 653	98%	45.50	594 / 605
liver	100%	9629.27	226 / 226	98%	39.99	398 / 406
uterus	100%	5623.20	170 / 170	98%	42.89	448 / 459
brain	98%	3591.29	2592 / 2642	98%	24.53	689 / 705
adrenal gland	100%	6002.30	258 / 258	90%	25.53	206 / 230
adipose	100%	5985.91	1204 / 1204	0%	0	0 / 0
blood vessel	100%	6873.38	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	25.43	29 / 29
muscle	100%	4972.10	803 / 803	0%	0	0 / 0
spleen	100%	5212.70	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	32.83	1 / 1
heart	97%	4426.24	832 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	96%	54.73	77 / 80
tonsil	0%	0	0 / 0	96%	29.22	43 / 45
peripheral blood	53%	2726.95	489 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0