Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 40% ± 14% | |
astrocyte | 19 studies | 68% ± 20% | |
fibroblast | 16 studies | 52% ± 20% | |
oligodendrocyte | 14 studies | 31% ± 15% | |
smooth muscle cell | 13 studies | 47% ± 15% | |
oligodendrocyte precursor cell | 11 studies | 34% ± 11% | |
pericyte | 10 studies | 44% ± 14% | |
adipocyte | 10 studies | 57% ± 23% | |
mesothelial cell | 9 studies | 56% ± 19% | |
endothelial cell of lymphatic vessel | 9 studies | 53% ± 21% | |
microglial cell | 7 studies | 38% ± 27% | |
GABAergic neuron | 6 studies | 35% ± 13% | |
epithelial cell | 6 studies | 42% ± 23% | |
macrophage | 5 studies | 28% ± 12% | |
cardiac muscle cell | 5 studies | 42% ± 10% | |
mast cell | 5 studies | 22% ± 7% | |
glutamatergic neuron | 5 studies | 32% ± 11% | |
basal cell | 5 studies | 44% ± 20% | |
ciliated cell | 5 studies | 45% ± 21% | |
club cell | 5 studies | 45% ± 18% | |
type I pneumocyte | 5 studies | 73% ± 5% | |
type II pneumocyte | 5 studies | 46% ± 7% | |
cholangiocyte | 4 studies | 69% ± 7% | |
podocyte | 4 studies | 64% ± 35% | |
Mueller cell | 4 studies | 68% ± 21% | |
hepatic stellate cell | 3 studies | 61% ± 15% | |
progenitor cell | 3 studies | 37% ± 12% | |
vein endothelial cell | 3 studies | 34% ± 14% | |
retina horizontal cell | 3 studies | 31% ± 9% | |
endothelial cell of vascular tree | 3 studies | 39% ± 11% | |
hepatocyte | 3 studies | 67% ± 19% | |
retinal pigment epithelial cell | 3 studies | 56% ± 21% | |
neural progenitor cell | 3 studies | 70% ± 10% | |
ependymal cell | 3 studies | 86% ± 8% | |
capillary endothelial cell | 3 studies | 35% ± 5% | |
myofibroblast cell | 3 studies | 46% ± 18% | |
respiratory goblet cell | 3 studies | 56% ± 18% | |
muscle cell | 3 studies | 43% ± 24% | |
neuron | 3 studies | 57% ± 31% | |
interneuron | 3 studies | 37% ± 23% | |
mucus secreting cell | 3 studies | 44% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 99% | 1508.73 | 243 / 245 | 100% | 10.08 | 501 / 502 |
stomach | 99% | 1397.13 | 354 / 359 | 95% | 7.29 | 271 / 286 |
breast | 100% | 2262.77 | 459 / 459 | 92% | 6.65 | 1029 / 1118 |
thymus | 100% | 1898.42 | 651 / 653 | 92% | 7.56 | 558 / 605 |
kidney | 100% | 1866.66 | 89 / 89 | 92% | 6.78 | 825 / 901 |
intestine | 100% | 3282.45 | 966 / 966 | 91% | 6.25 | 479 / 527 |
ovary | 100% | 2143.51 | 180 / 180 | 90% | 5.49 | 385 / 430 |
pancreas | 86% | 624.30 | 281 / 328 | 91% | 7.31 | 162 / 178 |
lung | 99% | 1974.13 | 575 / 578 | 74% | 4.42 | 851 / 1155 |
brain | 71% | 668.10 | 1878 / 2642 | 96% | 10.80 | 674 / 705 |
skin | 96% | 2020.88 | 1732 / 1809 | 70% | 3.77 | 330 / 472 |
esophagus | 90% | 1904.71 | 1297 / 1445 | 73% | 4.76 | 133 / 183 |
adrenal gland | 87% | 724.29 | 225 / 258 | 72% | 4.03 | 166 / 230 |
bladder | 100% | 2314.86 | 21 / 21 | 54% | 2.77 | 274 / 504 |
uterus | 100% | 2021.42 | 170 / 170 | 47% | 2.53 | 216 / 459 |
liver | 33% | 190.42 | 74 / 226 | 68% | 4.03 | 276 / 406 |
adipose | 100% | 3122.07 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4005.00 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 85% | 728.63 | 204 / 241 | 0% | 0 | 0 / 0 |
muscle | 76% | 540.53 | 611 / 803 | 0% | 0 | 0 / 0 |
heart | 74% | 747.26 | 633 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 53% | 2.02 | 42 / 80 |
tonsil | 0% | 0 | 0 / 0 | 49% | 3.53 | 22 / 45 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.19 | 2 / 29 |
peripheral blood | 0% | 0.52 | 1 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030010 | Biological process | establishment of cell polarity |
GO_0008104 | Biological process | protein localization |
GO_0051301 | Biological process | cell division |
GO_0007155 | Biological process | cell adhesion |
GO_0045197 | Biological process | establishment or maintenance of epithelial cell apical/basal polarity |
GO_0051660 | Biological process | establishment of centrosome localization |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0030054 | Cellular component | cell junction |
GO_0043296 | Cellular component | apical junction complex |
GO_0032991 | Cellular component | protein-containing complex |
GO_0012505 | Cellular component | endomembrane system |
GO_0005912 | Cellular component | adherens junction |
GO_0005938 | Cellular component | cell cortex |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0005515 | Molecular function | protein binding |
GO_0035091 | Molecular function | phosphatidylinositol binding |
Gene name | PARD3B |
Protein name | Partitioning defective 3 homolog B (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 19 protein) (PAR3-beta) (Partitioning defective 3-like protein) (PAR3-L protein) |
Synonyms | PAR3L PAR3B ALS2CR19 |
Description | FUNCTION: Putative adapter protein involved in asymmetrical cell division and cell polarization processes. May play a role in the formation of epithelial tight junctions. |
Accessions | Q8TEW8 ENST00000406610.7 [Q8TEW8-1] ENST00000349953.7 [Q8TEW8-5] ENST00000415947.1 [Q8TEW8-4] ENST00000358768.6 [Q8TEW8-2] ENST00000351153.5 [Q8TEW8-6] |