Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 10 studies | 30% ± 12% | |
type I pneumocyte | 9 studies | 22% ± 5% | |
type II pneumocyte | 9 studies | 28% ± 6% | |
endothelial cell | 9 studies | 31% ± 18% | |
classical monocyte | 8 studies | 19% ± 3% | |
naive B cell | 7 studies | 24% ± 7% | |
fibroblast | 7 studies | 24% ± 11% | |
GABAergic neuron | 7 studies | 39% ± 17% | |
oligodendrocyte | 7 studies | 29% ± 8% | |
monocyte | 6 studies | 18% ± 2% | |
glutamatergic neuron | 6 studies | 47% ± 24% | |
memory B cell | 6 studies | 23% ± 4% | |
B cell | 6 studies | 21% ± 3% | |
microglial cell | 6 studies | 23% ± 10% | |
oligodendrocyte precursor cell | 6 studies | 33% ± 13% | |
macrophage | 6 studies | 28% ± 10% | |
regulatory T cell | 6 studies | 19% ± 2% | |
T follicular helper cell | 5 studies | 20% ± 2% | |
T cell | 5 studies | 18% ± 2% | |
interneuron | 5 studies | 39% ± 22% | |
natural killer cell | 5 studies | 21% ± 4% | |
CD4-positive, alpha-beta memory T cell | 4 studies | 19% ± 3% | |
myeloid cell | 4 studies | 25% ± 7% | |
epithelial cell | 4 studies | 37% ± 9% | |
CD16-negative, CD56-bright natural killer cell, human | 4 studies | 16% ± 0% | |
Mueller cell | 4 studies | 24% ± 9% | |
retinal rod cell | 4 studies | 18% ± 2% | |
CD8-positive, alpha-beta memory T cell | 4 studies | 17% ± 1% | |
CD4-positive, alpha-beta T cell | 4 studies | 19% ± 4% | |
hematopoietic precursor cell | 3 studies | 22% ± 5% | |
precursor B cell | 3 studies | 19% ± 2% | |
amacrine cell | 3 studies | 20% ± 4% | |
retina horizontal cell | 3 studies | 20% ± 5% | |
retinal cone cell | 3 studies | 18% ± 1% | |
ciliated cell | 3 studies | 26% ± 4% | |
pericyte | 3 studies | 23% ± 7% | |
alveolar macrophage | 3 studies | 24% ± 8% | |
gamma-delta T cell | 3 studies | 24% ± 10% | |
neuron | 3 studies | 34% ± 9% | |
immature B cell | 3 studies | 20% ± 5% | |
plasmacytoid dendritic cell | 3 studies | 21% ± 6% | |
CD8-positive, alpha-beta T cell | 3 studies | 18% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 4318.48 | 578 / 578 | 100% | 19.91 | 1155 / 1155 |
prostate | 100% | 3179.24 | 245 / 245 | 100% | 18.38 | 502 / 502 |
esophagus | 100% | 2347.45 | 1444 / 1445 | 100% | 23.23 | 183 / 183 |
intestine | 100% | 2409.75 | 966 / 966 | 100% | 22.38 | 526 / 527 |
breast | 100% | 2812.78 | 459 / 459 | 100% | 21.56 | 1114 / 1118 |
uterus | 100% | 3150.18 | 170 / 170 | 100% | 18.81 | 457 / 459 |
brain | 100% | 2349.31 | 2631 / 2642 | 100% | 16.39 | 704 / 705 |
stomach | 100% | 1924.23 | 359 / 359 | 99% | 22.54 | 284 / 286 |
ovary | 100% | 4225.18 | 180 / 180 | 99% | 11.31 | 426 / 430 |
bladder | 100% | 2720.10 | 21 / 21 | 99% | 18.66 | 498 / 504 |
thymus | 100% | 3673.53 | 653 / 653 | 99% | 13.59 | 597 / 605 |
pancreas | 99% | 1293.14 | 325 / 328 | 99% | 14.29 | 176 / 178 |
kidney | 100% | 2941.38 | 89 / 89 | 98% | 15.85 | 882 / 901 |
skin | 100% | 3265.93 | 1808 / 1809 | 97% | 19.45 | 456 / 472 |
adrenal gland | 100% | 2611.64 | 258 / 258 | 96% | 14.13 | 220 / 230 |
liver | 100% | 1772.45 | 226 / 226 | 84% | 6.45 | 342 / 406 |
adipose | 100% | 2898.36 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 16.68 | 29 / 29 |
muscle | 100% | 2561.79 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2436.64 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.72 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.57 | 1 / 1 |
blood vessel | 100% | 2447.23 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1879.25 | 842 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 4291.79 | 908 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 79% | 5.81 | 63 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006913 | Biological process | nucleocytoplasmic transport |
GO_0015031 | Biological process | protein transport |
GO_0051028 | Biological process | mRNA transport |
GO_0042306 | Biological process | regulation of protein import into nucleus |
GO_0005643 | Cellular component | nuclear pore |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005635 | Cellular component | nuclear envelope |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0008139 | Molecular function | nuclear localization sequence binding |
GO_0017056 | Molecular function | structural constituent of nuclear pore |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NUP58 |
Protein name | Nucleoporin p58/p45 (58 kDa nucleoporin) (Nucleoporin-like protein 1) Nucleoporin 58 |
Synonyms | NUPL1 KIAA0410 |
Description | FUNCTION: Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane. . |
Accessions | F8WCJ8 ENST00000490231.7 ENST00000695571.2 ENST00000381747.7 A0A8Q3WKQ7 ENST00000695578.1 H7BYF2 ENST00000695572.2 A0A8Q3WKL7 A0A8Q3WLQ2 Q5JRG1 ENST00000695575.1 A0A8Q3WKL9 ENST00000463407.6 [Q9BVL2-2] F8WBZ1 ENST00000695577.1 ENST00000381736.8 [Q9BVL2-1] ENST00000466694.6 A0A8Q3WKK3 ENST00000394327.2 A0A8Q3WKL0 ENST00000381718.8 [Q9BVL2-3] Q9BVL2 A0A8Q3WKK5 A0A8Q3WKM2 ENST00000477876.3 ENST00000481980.3 ENST00000495460.2 |