NGRN report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
smooth muscle cell	9 studies	29% ± 11%	Explore
ciliated cell	8 studies	39% ± 22%	Explore
fibroblast	8 studies	25% ± 10%	Explore
naive B cell	7 studies	20% ± 4%	Explore
pericyte	7 studies	28% ± 9%	Explore
regulatory T cell	6 studies	20% ± 2%	Explore
myofibroblast cell	6 studies	32% ± 11%	Explore
B cell	6 studies	19% ± 2%	Explore
CD8-positive, alpha-beta T cell	5 studies	18% ± 3%	Explore
memory B cell	5 studies	19% ± 3%	Explore
epithelial cell	5 studies	28% ± 10%	Explore
connective tissue cell	5 studies	27% ± 14%	Explore
endothelial cell of lymphatic vessel	5 studies	24% ± 6%	Explore
neuron	5 studies	37% ± 20%	Explore
endothelial cell of vascular tree	5 studies	25% ± 2%	Explore
glutamatergic neuron	5 studies	39% ± 19%	Explore
CD4-positive, alpha-beta T cell	4 studies	17% ± 2%	Explore
abnormal cell	4 studies	33% ± 12%	Explore
GABAergic neuron	4 studies	33% ± 16%	Explore
gamma-delta T cell	4 studies	20% ± 3%	Explore
interneuron	4 studies	34% ± 19%	Explore
endothelial cell	4 studies	23% ± 9%	Explore
basal cell	3 studies	30% ± 9%	Explore
secretory cell	3 studies	17% ± 2%	Explore
mucosal invariant T cell	3 studies	18% ± 1%	Explore
CD16-negative, CD56-bright natural killer cell, human	3 studies	19% ± 3%	Explore
capillary endothelial cell	3 studies	23% ± 5%	Explore
endothelial cell of artery	3 studies	24% ± 5%	Explore
T follicular helper cell	3 studies	21% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	6 studies	30% ± 16%	Explore
lung	3 studies	21% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	7811.53	180 / 180	100%	33.27	428 / 430
brain	100%	23384.92	2642 / 2642	99%	41.49	701 / 705
esophagus	100%	9562.19	1443 / 1445	99%	23.11	182 / 183
intestine	100%	9456.03	966 / 966	98%	18.53	517 / 527
breast	100%	7520.28	459 / 459	98%	18.63	1094 / 1118
prostate	100%	10061.32	245 / 245	98%	20.65	491 / 502
lung	99%	7256.00	572 / 578	99%	18.84	1139 / 1155
skin	99%	6094.14	1799 / 1809	98%	20.84	463 / 472
stomach	98%	6104.59	352 / 359	99%	20.71	284 / 286
bladder	100%	10154.05	21 / 21	95%	14.82	480 / 504
adrenal gland	100%	9679.00	258 / 258	95%	34.57	218 / 230
thymus	100%	8362.66	651 / 653	95%	18.34	575 / 605
uterus	100%	8784.44	170 / 170	95%	16.07	434 / 459
kidney	100%	7746.89	89 / 89	93%	14.06	839 / 901
pancreas	78%	2574.16	255 / 328	98%	15.12	175 / 178
liver	82%	3004.82	186 / 226	77%	8.23	313 / 406
muscle	100%	24048.09	803 / 803	0%	0	0 / 0
spleen	100%	5003.53	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	8.47	1 / 1
blood vessel	100%	11456.56	1334 / 1335	0%	0	0 / 0
adipose	100%	7599.82	1203 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	98%	19.02	78 / 80
tonsil	0%	0	0 / 0	96%	14.18	43 / 45
heart	95%	9506.86	817 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	62%	5.55	18 / 29
peripheral blood	21%	681.98	193 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0