Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 38 studies | 50% ± 22% | |
smooth muscle cell | 20 studies | 33% ± 12% | |
fibroblast | 19 studies | 32% ± 12% | |
endothelial cell | 19 studies | 37% ± 18% | |
type I pneumocyte | 12 studies | 55% ± 15% | |
type II pneumocyte | 11 studies | 37% ± 15% | |
basal cell | 10 studies | 28% ± 17% | |
ciliated cell | 9 studies | 21% ± 3% | |
epithelial cell | 9 studies | 27% ± 9% | |
club cell | 8 studies | 26% ± 7% | |
myofibroblast cell | 7 studies | 30% ± 13% | |
hepatocyte | 6 studies | 65% ± 24% | |
capillary endothelial cell | 6 studies | 27% ± 7% | |
Mueller cell | 6 studies | 29% ± 4% | |
respiratory goblet cell | 5 studies | 27% ± 9% | |
endothelial cell of lymphatic vessel | 5 studies | 21% ± 6% | |
connective tissue cell | 5 studies | 34% ± 15% | |
neuron | 4 studies | 36% ± 23% | |
GABAergic neuron | 4 studies | 29% ± 10% | |
brush cell | 4 studies | 53% ± 18% | |
interneuron | 4 studies | 36% ± 18% | |
renal principal cell | 4 studies | 34% ± 9% | |
pancreatic A cell | 3 studies | 46% ± 16% | |
squamous epithelial cell | 3 studies | 35% ± 22% | |
secretory cell | 3 studies | 28% ± 8% | |
cholangiocyte | 3 studies | 65% ± 12% | |
glutamatergic neuron | 3 studies | 38% ± 12% | |
pancreatic ductal cell | 3 studies | 51% ± 22% | |
transit amplifying cell | 3 studies | 38% ± 30% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 31% ± 6% | |
podocyte | 3 studies | 59% ± 11% | |
enteroendocrine cell | 3 studies | 21% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 11472.85 | 578 / 578 | 99% | 51.15 | 1140 / 1155 |
liver | 100% | 14892.55 | 226 / 226 | 99% | 65.46 | 400 / 406 |
pancreas | 100% | 5316.78 | 328 / 328 | 98% | 35.17 | 174 / 178 |
breast | 100% | 6868.28 | 459 / 459 | 97% | 43.11 | 1086 / 1118 |
esophagus | 96% | 2581.18 | 1394 / 1445 | 99% | 65.96 | 182 / 183 |
skin | 99% | 7590.41 | 1797 / 1809 | 96% | 47.11 | 452 / 472 |
uterus | 99% | 2936.08 | 169 / 170 | 94% | 41.66 | 432 / 459 |
prostate | 98% | 2681.84 | 241 / 245 | 93% | 25.22 | 468 / 502 |
thymus | 100% | 4284.37 | 652 / 653 | 89% | 20.57 | 538 / 605 |
stomach | 93% | 1866.47 | 334 / 359 | 95% | 31.68 | 273 / 286 |
intestine | 90% | 2436.53 | 865 / 966 | 98% | 35.87 | 514 / 527 |
kidney | 100% | 4531.22 | 89 / 89 | 86% | 34.06 | 778 / 901 |
bladder | 81% | 2195.33 | 17 / 21 | 86% | 32.34 | 431 / 504 |
ovary | 97% | 2451.49 | 175 / 180 | 52% | 8.51 | 223 / 430 |
adrenal gland | 38% | 491.40 | 98 / 258 | 69% | 29.46 | 159 / 230 |
brain | 62% | 983.84 | 1644 / 2642 | 42% | 8.36 | 297 / 705 |
adipose | 100% | 8125.81 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4827.58 | 1331 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 2361.95 | 833 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 41.41 | 40 / 45 |
eye | 0% | 0 | 0 / 0 | 79% | 15.22 | 63 / 80 |
spleen | 74% | 1146.24 | 179 / 241 | 0% | 0 | 0 / 0 |
muscle | 63% | 940.51 | 506 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 24% | 2.70 | 7 / 29 |
peripheral blood | 6% | 121.09 | 54 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006897 | Biological process | endocytosis |
GO_0030048 | Biological process | actin filament-based movement |
GO_0006892 | Biological process | post-Golgi vesicle-mediated transport |
GO_0051017 | Biological process | actin filament bundle assembly |
GO_0007015 | Biological process | actin filament organization |
GO_0005903 | Cellular component | brush border |
GO_0005902 | Cellular component | microvillus |
GO_0005886 | Cellular component | plasma membrane |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005769 | Cellular component | early endosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005884 | Cellular component | actin filament |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0030175 | Cellular component | filopodium |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0071944 | Cellular component | cell periphery |
GO_0005737 | Cellular component | cytoplasm |
GO_0010008 | Cellular component | endosome membrane |
GO_0045177 | Cellular component | apical part of cell |
GO_0016459 | Cellular component | myosin complex |
GO_0005547 | Molecular function | phosphatidylinositol-3,4,5-trisphosphate binding |
GO_0045296 | Molecular function | cadherin binding |
GO_0005546 | Molecular function | phosphatidylinositol-4,5-bisphosphate binding |
GO_0051015 | Molecular function | actin filament binding |
GO_0000146 | Molecular function | microfilament motor activity |
GO_0005524 | Molecular function | ATP binding |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | MYO1B |
Protein name | MYO1B protein Unconventional myosin-Ib (MYH-1c) (Myosin I alpha) (MMI-alpha) (MMIa) MYO1B variant protein (Myosin IB, isoform CRA_a) Myosin IB |
Synonyms | hCG_25797 |
Description | FUNCTION: Motor protein that may participate in process critical to neuronal development and function such as cell migration, neurite outgrowth and vesicular transport. . |
Accessions | ENST00000418908.5 Q05CR5 ENST00000451437.5 E9PDF6 E7EQD9 A0A0U1RRI3 ENST00000634375.1 ENST00000427152.1 ENST00000392316.5 ENST00000420448.1 ENST00000304164.8 [O43795-1] C9JUP5 ENST00000392318.8 [O43795-1] O43795 ENST00000339514.8 [O43795-2] H7C2Y7 C9JYW1 C9K0I9 ENST00000438652.5 B0I1S9 |